Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012572.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8012571.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8012570.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8012574.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8012575.1 | RIBOSOME RECYCLING FACTOR |
| CAI8012576.1 | URIDYLATE KINASE |
| CAI8012578.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8012577.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8012579.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8012580.1 | PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED |
| CAI8012581.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8012582.1 | |
| CAI8012583.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8012584.1 | OLIGOPEPTIDE/DIPEPTIDE ABC TRANSPORTER, ATPASE SUBUNIT |
| CAI8012585.1 | ABC-TYPE DIPEPTIDE/OLIGOPEPTIDE TRANSPORT SYSTEM, ATPASE COMPONENT |
| CAI8012586.1 | |
| CAI8012589.1 | URIDINE KINASE |
| CAI8012588.1 | URIDINE KINASE |
| CAI8012587.1 | 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN |
| CAI8012590.1 | URIDINE KINASE |
| CAI8012591.1 | 16.7 KDA PROTEIN IN WHIE LOCUS |
| CAI8012593.1 | SPINSTER |
| CAI8012592.1 | SPINSTER |
| CAI8012594.1 | SPINSTER |
| CAI8012598.1 | UNCHARACTERIZED |
| CAI8012599.1 | UNCHARACTERIZED |
| CAI8012597.1 | UNCHARACTERIZED |
| CAI8012596.1 | UNCHARACTERIZED |
| CAI8012595.1 | UNCHARACTERIZED |
| CAI8012600.1 | UNCHARACTERIZED |
| CAI8012603.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8012604.1 | |
| CAI8012602.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8012601.1 | |
| CAI8012606.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8012605.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8012607.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8012608.1 | |
| CAI8012609.1 | |
| CAI8012610.1 | |
| CAI8012611.1 | |
| CAI8012612.1 | |
| CAI8012618.1 | |
| CAI8012617.1 | |
| CAI8012615.1 | |
| CAI8012614.1 | |
| CAI8012619.1 | |
| CAI8012613.1 | |
| CAI8012616.1 | |
| CAI8012620.1 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P |
