Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012372.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8012371.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8012374.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8012373.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8012375.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8012376.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8012377.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8012378.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8012379.1 | |
| CAI8012380.1 | |
| CAI8012381.1 | BLL1675 PROTEIN |
| CAI8012384.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8012383.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8012382.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8012385.1 | |
| CAI8012386.1 | |
| CAI8012387.1 | BETA-LACTAMASE-RELATED |
| CAI8012388.1 | BETA-LACTAMASE-RELATED |
| CAI8012389.1 | |
| CAI8012390.1 | LIPOPROTEIN-RELATED |
| CAI8012392.1 | |
| CAI8012391.1 | |
| CAI8012393.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8012394.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8012395.1 | |
| CAI8012396.1 | |
| CAI8012397.1 | CALCIUM BINDING PROTEINS |
| CAI8012398.1 | FORMIMINOTRANSFERASE-CYCLODEAMINASE |
| CAI8012399.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8012400.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8012401.1 | |
| CAI8012403.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8012402.1 | |
| CAI8012404.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8012405.1 | |
| CAI8012407.1 | |
| CAI8012408.1 | |
| CAI8012406.1 | |
| CAI8012409.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8012410.1 | LUD_DOM DOMAIN-CONTAINING PROTEIN |
| CAI8012411.1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
| CAI8012412.1 | |
| CAI8012413.1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
| CAI8012414.1 | RRNA METHYLTRANSFERASE 3, |
| CAI8012415.1 | BLR3430 PROTEIN |
| CAI8012416.1 | INNER MEMBRANE PROTEIN-RELATED-RELATED |
| CAI8012417.1 | INNER MEMBRANE PROTEIN-RELATED-RELATED |
| CAI8012418.1 | |
| CAI8012419.1 | AMINOHYDROLASE SSNA-RELATED |
| CAI8012420.1 | POLYSACCHARIDE DEACETYLASE-RELATED |
