Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012321.1 | |
| CAI8012322.1 | |
| CAI8012323.1 | RHO FAMILY GTPASE |
| CAI8012324.1 | PRE-MRNA SPLICING FACTOR-RELATED |
| CAI8012326.1 | PRE-MRNA SPLICING FACTOR-RELATED |
| CAI8012325.1 | PRE-MRNA SPLICING FACTOR-RELATED |
| CAI8012327.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 12 |
| CAI8012332.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012331.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012330.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012329.1 | |
| CAI8012328.1 | |
| CAI8012333.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012334.1 | |
| CAI8012335.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012336.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012337.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012338.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012339.1 | |
| CAI8012340.1 | |
| CAI8012343.1 | PHOSDUCIN-LIKE PROTEIN |
| CAI8012342.1 | PHOSDUCIN-LIKE PROTEIN |
| CAI8012341.1 | PHOSDUCIN-LIKE PROTEIN |
| CAI8012344.1 | PHOSDUCIN-LIKE PROTEIN |
| CAI8012345.1 | PHOSDUCIN-LIKE PROTEIN |
| CAI8012346.1 | PHOSDUCIN-LIKE PROTEIN |
| CAI8012347.1 | SMALL LYSINE-RICH PROTEIN 1 |
| CAI8012348.1 | ENDONUCLEASE-RELATED |
| CAI8012349.1 | LYSINE-SPECIFIC DEMETHYLASE |
| CAI8012351.1 | NIBRIN-RELATED |
| CAI8012350.1 | NIBRIN-RELATED |
| CAI8012352.1 | NIBRIN-RELATED |
| CAI8012353.1 | |
| CAI8012358.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8012357.1 | |
| CAI8012356.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8012355.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8012354.1 | |
| CAI8012359.1 | |
| CAI8012360.1 | DNA REPAIR PROTEIN XP-C / RAD4 |
| CAI8012361.1 | DNA REPAIR PROTEIN XP-C / RAD4 |
| CAI8012362.1 | DNA REPAIR PROTEIN XP-C / RAD4 |
| CAI8012363.1 | PIERCE HOMOLOG |
| CAI8012364.1 | PIERCE HOMOLOG |
| CAI8012365.1 | |
| CAI8012366.1 | 1,2-DIOXYGENASE PROTEIN-RELATED |
| CAI8012367.1 | 1,2-DIOXYGENASE PROTEIN-RELATED |
| CAI8012368.1 | PEPTIDASE S12 |
| CAI8012369.1 | |
| CAI8012370.1 | BLL1675 PROTEIN |
