Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012021.1 | |
| CAI8012022.1 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL |
| CAI8012023.1 | TRANSAMIDASE |
| CAI8012024.1 | TRANSAMIDASE |
| CAI8012025.1 | |
| CAI8012026.1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
| CAI8012027.1 | SULFITE REDUCTASE |
| CAI8012028.1 | COLLAGEN ALPHA |
| CAI8012031.1 | |
| CAI8012030.1 | |
| CAI8012029.1 | |
| CAI8012032.1 | |
| CAI8012034.1 | LACTOYLGLUTATHIONE LYASE |
| CAI8012033.1 | LACTOYLGLUTATHIONE LYASE |
| CAI8012035.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D |
| CAI8012036.1 | CELL SHAPE-DETERMINING PROTEIN MREB |
| CAI8012037.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8012041.1 | GTP CYCLOHYDROLASE I |
| CAI8012040.1 | GTP CYCLOHYDROLASE I |
| CAI8012039.1 | GTP CYCLOHYDROLASE I |
| CAI8012038.1 | GTP CYCLOHYDROLASE I |
| CAI8012042.1 | PHOSPHOENOLPYRUVATE-PROTEIN PHOSPHOTRANSFERASE |
| CAI8012043.1 | |
| CAI8012044.1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE |
| CAI8012047.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8012046.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8012045.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8012048.1 | |
| CAI8012049.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8012050.1 | CYTOKINE RECEPTOR |
| CAI8012051.1 | |
| CAI8012054.1 | CATION TRANSPORTING ATPASE |
| CAI8012052.1 | CATION TRANSPORTING ATPASE |
| CAI8012053.1 | CATION TRANSPORTING ATPASE |
| CAI8012055.1 | CATION TRANSPORTING ATPASE |
| CAI8012056.1 | CATION TRANSPORTING ATPASE |
| CAI8012057.1 | CATION TRANSPORTING ATPASE |
| CAI8012058.1 | CATION TRANSPORTING ATPASE |
| CAI8012059.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8012060.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8012062.1 | |
| CAI8012061.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8012063.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8012065.1 | |
| CAI8012064.1 | |
| CAI8012068.1 | |
| CAI8012067.1 | SERINE/THREONINE PROTEIN KINASE |
| CAI8012066.1 | SERINE/THREONINE PROTEIN KINASE |
| CAI8012069.1 | SERINE/THREONINE PROTEIN KINASE |
| CAI8012073.1 | KREV INTERACTION TRAPPED 1-RELATED |
