Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011774.1 | ACONITATE HYDRATASE B |
| CAI8011773.1 | ACONITATE HYDRATASE B |
| CAI8011772.1 | ACONITATE HYDRATASE B |
| CAI8011771.1 | ACONITATE HYDRATASE B |
| CAI8011775.1 | FORMIN-BINDING PROTEIN 4 |
| CAI8011778.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8011777.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8011776.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8011779.1 | EXOSOME COMPLEX COMPONENT |
| CAI8011780.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8011784.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8011782.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8011781.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8011783.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8011785.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8011786.1 | ELONGATION FACTOR P |
| CAI8011787.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8011788.1 | |
| CAI8011789.1 | |
| CAI8011790.1 | RNA POLYMERASE ECF-TYPE SIGMA FACTO |
| CAI8011791.1 | |
| CAI8011793.1 | UPF0145 PROTEIN YBJQ |
| CAI8011792.1 | UPF0145 PROTEIN YBJQ |
| CAI8011794.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8011795.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8011801.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8011800.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8011799.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8011798.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8011797.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8011796.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8011802.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8011803.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8011804.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8011805.1 | |
| CAI8011806.1 | MONOACYLGLYCEROL LIPASE |
| CAI8011807.1 | |
| CAI8011808.1 | RIBOSOMAL PROTEIN L19 |
| CAI8011809.1 | PRIMOSOMAL PROTEIN N |
| CAI8011810.1 | ATP-DEPENDENT PROTEASE LA (LON) DOMAIN PROTEIN |
| CAI8011811.1 | 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC |
| CAI8011812.1 | 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC |
| CAI8011813.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8011814.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8011815.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8011816.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8011817.1 | |
| CAI8011818.1 | |
| CAI8011819.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8011820.1 |
