Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011571.1 | TRNA SULFURTRANSFERASE |
| CAI8011572.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8011573.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8011574.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8011575.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8011576.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8011577.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8011578.1 | OCTANOYLTRANSFERASE |
| CAI8011579.1 | ASPARTATE AMINOTRANSFERASE YHDR-RELATED |
| CAI8011580.1 | REGULATOR OF RPOS |
| CAI8011581.1 | SLR1406 PROTEIN |
| CAI8011586.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011584.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011582.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011583.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011585.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011590.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011588.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011589.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011587.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011591.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011592.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8011593.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8011594.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8011595.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8011596.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8011597.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8011598.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8011599.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8011600.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8011605.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8011603.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8011602.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR7 |
| CAI8011601.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR7 |
| CAI8011604.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8011606.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8011609.1 | REGULATOR OF MICROTUBULE DYNAMICS PROTEIN |
| CAI8011608.1 | REGULATOR OF MICROTUBULE DYNAMICS PROTEIN |
| CAI8011607.1 | REGULATOR OF MICROTUBULE DYNAMICS PROTEIN |
| CAI8011610.1 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 |
| CAI8011612.1 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 |
| CAI8011611.1 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 |
| CAI8011613.1 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 |
| CAI8011614.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8011616.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8011615.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8011617.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 17 |
| CAI8011618.1 | LSM1 |
| CAI8011625.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8011624.1 | FACIOGENITAL DYSPLASIA PROTEIN |
