Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011271.1 | LIPOPROTEIN-RELEASING SYSTEM ATP-BINDING PROTEIN LOLD |
| CAI8011270.1 | LIPOPROTEIN-RELEASING SYSTEM ATP-BINDING PROTEIN LOLD |
| CAI8011273.1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER |
| CAI8011274.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8011275.1 | |
| CAI8011276.1 | DNA POLYMERASE I |
| CAI8011277.1 | DNA POLYMERASE I |
| CAI8011278.1 | DNA POLYMERASE I |
| CAI8011280.1 | PEST PROTEOLYTIC SIGNAL-CONTAINING NUCLEAR PROTEIN |
| CAI8011281.1 | |
| CAI8011279.1 | PEST PROTEOLYTIC SIGNAL-CONTAINING NUCLEAR PROTEIN |
| CAI8011283.1 | SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED |
| CAI8011282.1 | SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED |
| CAI8011285.1 | |
| CAI8011286.1 | |
| CAI8011287.1 | |
| CAI8011284.1 | |
| CAI8011288.1 | |
| CAI8011290.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8011289.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8011292.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8011291.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8011293.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8011294.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW |
| CAI8011295.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW |
| CAI8011296.1 | |
| CAI8011297.1 | TRANSPOSASE INSF FOR INSERTION SEQUENCE IS3B-RELATED |
| CAI8011298.1 | REGULATOR OF RPOS |
| CAI8011299.1 | CYTOSINE DEAMINASE FAMILY MEMBER |
| CAI8011300.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8011301.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8011306.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8011304.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8011303.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8011302.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8011305.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8011312.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011314.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011315.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011313.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011316.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011310.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011311.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011309.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011308.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011307.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8011317.1 | SLR1406 PROTEIN |
| CAI8011318.1 | CYCLASE-LIKE PROTEIN 2 |
| CAI8011319.1 | |
| CAI8011320.1 | HISTIDYL-TRNA SYNTHETASE |
