Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011122.1 | ATAXIN-3-RELATED |
| CAI8011123.1 | |
| CAI8011121.1 | ATAXIN-3-RELATED |
| CAI8011124.1 | |
| CAI8011125.1 | |
| CAI8011126.1 | UBIQUITIN-ASSOCIATED AND SH3 DOMAIN-CONTAINING BA-RELATED |
| CAI8011127.1 | |
| CAI8011128.1 | |
| CAI8011131.1 | |
| CAI8011130.1 | |
| CAI8011129.1 | |
| CAI8011132.1 | |
| CAI8011133.1 | |
| CAI8011134.1 | CHROMOBOX PROTEIN |
| CAI8011135.1 | |
| CAI8011136.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8011138.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8011137.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8011139.1 | |
| CAI8011140.1 | FOLLISTATIN-RELATED |
| CAI8011141.1 | |
| CAI8011142.1 | ALANYL-TRNA SYNTHETASE |
| CAI8011143.1 | ALANYL-TRNA SYNTHETASE |
| CAI8011144.1 | ALANYL-TRNA SYNTHETASE |
| CAI8011145.1 | ALANYL-TRNA SYNTHETASE |
| CAI8011146.1 | |
| CAI8011147.1 | |
| CAI8011148.1 | NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 |
| CAI8011149.1 | NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 |
| CAI8011150.1 | NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 |
| CAI8011151.1 | NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 |
| CAI8011154.1 | |
| CAI8011153.1 | |
| CAI8011152.1 | |
| CAI8011155.1 | NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 |
| CAI8011157.1 | EXPORTIN 4,7-RELATED |
| CAI8011156.1 | EXPORTIN 4,7-RELATED |
| CAI8011158.1 | EXPORTIN 4,7-RELATED |
| CAI8011160.1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| CAI8011161.1 | |
| CAI8011159.1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| CAI8011162.1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| CAI8011165.1 | SIALATE O-ACETYLESTERASE |
| CAI8011164.1 | SIALATE O-ACETYLESTERASE |
| CAI8011163.1 | SIALATE O-ACETYLESTERASE |
| CAI8011166.1 | SIALATE O-ACETYLESTERASE |
| CAI8011167.1 | SIALATE O-ACETYLESTERASE |
| CAI8011169.1 | SH2 DOMAIN CONTAINING PROTEIN |
| CAI8011170.1 | SH2 DOMAIN CONTAINING PROTEIN |
| CAI8011168.1 | SH2 DOMAIN CONTAINING PROTEIN |
