Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010971.1 | |
| CAI8010977.1 | |
| CAI8010976.1 | |
| CAI8010975.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8010973.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8010974.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8010972.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8010983.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8010985.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8010984.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8010982.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8010981.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8010980.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8010979.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8010978.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8010987.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8010986.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8010988.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8010990.1 | |
| CAI8010991.1 | |
| CAI8010992.1 | |
| CAI8010993.1 | |
| CAI8010989.1 | |
| CAI8010994.1 | |
| CAI8010995.1 | 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC |
| CAI8010996.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8010999.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8010998.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8010997.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8011000.1 | RIBOSOMAL PROTEIN S7 |
| CAI8011001.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8011002.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8011003.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8011004.1 | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER |
| CAI8011005.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI8011006.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8011007.1 | RIBOSOMAL PROTEIN L2 |
| CAI8011008.1 | |
| CAI8011009.1 | CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED |
| CAI8011010.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8011011.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI8011012.1 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
| CAI8011013.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI8011014.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8011015.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8011017.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8011016.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8011018.1 | 50S RIBOSOMAL PROTEIN L15 |
| CAI8011020.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8011019.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
