Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010721.1 | |
| CAI8010722.1 | |
| CAI8010723.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8010724.1 | |
| CAI8010725.1 | |
| CAI8010726.1 | |
| CAI8010727.1 | ABC TRANSPORTER, ATP-BINDING PROTEIN |
| CAI8010728.1 | 5-KETO-D-GLUCONATE 5-REDUCTASE |
| CAI8010729.1 | BLL5662 PROTEIN-RELATED |
| CAI8010730.1 | |
| CAI8010733.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI8010732.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI8010731.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI8010734.1 | |
| CAI8010735.1 | MEMBRANE COMPONENT OF ABC TRANSPORTER YHHJ-RELATED |
| CAI8010736.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI8010737.1 | PHP DOMAIN PROTEIN |
| CAI8010738.1 | |
| CAI8010739.1 | |
| CAI8010740.1 | |
| CAI8010741.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8010742.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8010743.1 | SULFATASE |
| CAI8010744.1 | |
| CAI8010746.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8010747.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8010745.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8010750.1 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE DAHP SYNTHETASE |
| CAI8010748.1 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE DAHP SYNTHETASE |
| CAI8010749.1 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE DAHP SYNTHETASE |
| CAI8010751.1 | |
| CAI8010752.1 | |
| CAI8010753.1 | BCDNA.GH03377 |
| CAI8010754.1 | |
| CAI8010755.1 | XANTHINE DEHYDROGENASE |
| CAI8010756.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8010757.1 | |
| CAI8010758.1 | |
| CAI8010759.1 | |
| CAI8010760.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8010761.1 | |
| CAI8010762.1 | PBS LYASE HEAT-LIKE PROTEIN |
| CAI8010763.1 | HEAVY METAL TRANSPORTER |
| CAI8010764.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8010765.1 | OXIDOREDUCTASE-RELATED |
| CAI8010766.1 | BCDNA.GH03377 |
| CAI8010772.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8010770.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8010771.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8010768.1 | DNA-DIRECTED RNA POLYMERASE |
