Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010471.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8010472.1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
| CAI8010473.1 | BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE |
| CAI8010474.1 | |
| CAI8010475.1 | |
| CAI8010476.1 | ACYL-COA DEHYDROGENASE |
| CAI8010477.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8010478.1 | ARGININOSUCCINATE SYNTHASE |
| CAI8010479.1 | ARGININOSUCCINATE SYNTHASE |
| CAI8010480.1 | AMINOTRANSFERASE CLASS III |
| CAI8010481.1 | AMINOTRANSFERASE CLASS III |
| CAI8010483.1 | N-ACETYLGLUTAMATE SYNTHASE |
| CAI8010484.1 | N-ACETYLGLUTAMATE SYNTHASE |
| CAI8010482.1 | N-ACETYLGLUTAMATE SYNTHASE |
| CAI8010485.1 | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ |
| CAI8010486.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8010487.1 | PROTEIN ABHD11 |
| CAI8010488.1 | |
| CAI8010489.1 | |
| CAI8010490.1 | BNAUNNG04460D PROTEIN-RELATED |
| CAI8010491.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8010492.1 | |
| CAI8010493.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
| CAI8010494.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
| CAI8010495.1 | |
| CAI8010496.1 | |
| CAI8010497.1 | |
| CAI8010498.1 | |
| CAI8010499.1 | |
| CAI8010500.1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 |
| CAI8010501.1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 |
| CAI8010505.1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 |
| CAI8010506.1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 |
| CAI8010504.1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 |
| CAI8010503.1 | |
| CAI8010502.1 | |
| CAI8010507.1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 |
| CAI8010508.1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 |
| CAI8010509.1 | |
| CAI8010511.1 | |
| CAI8010510.1 | |
| CAI8010512.1 | |
| CAI8010513.1 | |
| CAI8010514.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8010515.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8010516.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8010517.1 | |
| CAI8010518.1 | |
| CAI8010519.1 | |
| CAI8010520.1 | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED |
