Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010271.1 | RAN BINDING PROTEIN 9-RELATED |
| CAI8010273.1 | CCR4-NOT TRANSCRIPTION COMPLEX |
| CAI8010272.1 | |
| CAI8010274.1 | THIOSULFATE SULFERTANSFERASE |
| CAI8010275.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR MSS4 |
| CAI8010277.1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| CAI8010278.1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| CAI8010276.1 | PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN |
| CAI8010279.1 | |
| CAI8010281.1 | LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1 |
| CAI8010280.1 | LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1 |
| CAI8010282.1 | LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1 |
| CAI8010285.1 | TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT |
| CAI8010283.1 | TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT |
| CAI8010284.1 | TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT |
| CAI8010286.1 | TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT |
| CAI8010288.1 | SKELETOR-RELATED |
| CAI8010287.1 | SKELETOR-RELATED |
| CAI8010289.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8010290.1 | SKELETOR-RELATED |
| CAI8010291.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8010292.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| CAI8010294.1 | UNCHARACTERIZED |
| CAI8010293.1 | UNCHARACTERIZED |
| CAI8010295.1 | UNCHARACTERIZED |
| CAI8010296.1 | UNCHARACTERIZED |
| CAI8010297.1 | UNCHARACTERIZED |
| CAI8010298.1 | 6-PHOSPHOGLUCONOLACTONASE |
| CAI8010299.1 | UNCHARACTERIZED |
| CAI8010300.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8010301.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8010303.1 | |
| CAI8010302.1 | UNCHARACTERIZED |
| CAI8010304.1 | |
| CAI8010305.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8010306.1 | |
| CAI8010307.1 | |
| CAI8010308.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8010309.1 | |
| CAI8010310.1 | EPOXIDE HYDROLASE |
| CAI8010311.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8010312.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8010313.1 | OS01G0149700 PROTEIN |
| CAI8010314.1 | |
| CAI8010315.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8010316.1 | AMINOPEPTIDASE |
| CAI8010317.1 | |
| CAI8010318.1 | |
| CAI8010319.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8010320.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
