Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010124.1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
| CAI8010123.1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
| CAI8010122.1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
| CAI8010121.1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
| CAI8010125.1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
| CAI8010126.1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
| CAI8010127.1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
| CAI8010129.1 | GLUTATHIONE PEROXIDASE |
| CAI8010128.1 | GLUTATHIONE PEROXIDASE |
| CAI8010131.1 | UPSTREAM BINDING TRANSCRIPTION FACTOR |
| CAI8010130.1 | UPSTREAM BINDING TRANSCRIPTION FACTOR |
| CAI8010132.1 | HIGH MOBILITY GROUP PROTEIN DSP1 |
| CAI8010134.1 | PHOSPHATASE DCR2-RELATED-RELATED |
| CAI8010133.1 | PHOSPHATASE DCR2-RELATED-RELATED |
| CAI8010136.1 | POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED |
| CAI8010135.1 | POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED |
| CAI8010137.1 | POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED |
| CAI8010140.1 | CYTOSOLIC CARBOXYPEPTIDASE |
| CAI8010139.1 | CYTOSOLIC CARBOXYPEPTIDASE |
| CAI8010138.1 | CYTOSOLIC CARBOXYPEPTIDASE |
| CAI8010141.1 | |
| CAI8010143.1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
| CAI8010142.1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
| CAI8010145.1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
| CAI8010144.1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
| CAI8010146.1 | |
| CAI8010148.1 | MOLTING PROTEIN MLT-4 |
| CAI8010147.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8010149.1 | MYOTROPHIN |
| CAI8010150.1 | MOLTING PROTEIN MLT-4 |
| CAI8010152.1 | |
| CAI8010151.1 | RIBULOKINASE |
| CAI8010153.1 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED |
| CAI8010154.1 | CRSP70 |
| CAI8010155.1 | NUCLEOTIDE KINASE |
| CAI8010156.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8010157.1 | |
| CAI8010158.1 | |
| CAI8010159.1 | CRUMBS FAMILY MEMBER |
| CAI8010160.1 | LEPTIN RECEPTOR-RELATED |
| CAI8010161.1 | LEPTIN RECEPTOR-RELATED |
| CAI8010162.1 | LEPTIN RECEPTOR-RELATED |
| CAI8010164.1 | ZINC FINGER PROTEIN 277 |
| CAI8010163.1 | ZINC FINGER PROTEIN 277 |
| CAI8010165.1 | |
| CAI8010166.1 | |
| CAI8010167.1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| CAI8010168.1 | |
| CAI8010169.1 | ALPHA-MANNOSIDASE 2C1 |
| CAI8010170.1 | DIAMINOPIMELATE DECARBOXYLASE |
