Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009821.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8009822.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8009826.1 | METALLOPROTEASE M41 FTSH |
| CAI8009825.1 | METALLOPROTEASE M41 FTSH |
| CAI8009824.1 | METALLOPROTEASE M41 FTSH |
| CAI8009823.1 | METALLOPROTEASE M41 FTSH |
| CAI8009827.1 | THIOSULFATE SULFURTRANSFERASE |
| CAI8009829.1 | GLUTAMINE SYNTHETASE |
| CAI8009828.1 | GLUTAMINE SYNTHETASE |
| CAI8009830.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8009831.1 | OXALOACETATE DECARBOXYLASE ALPHA CHAIN |
| CAI8009832.1 | |
| CAI8009833.1 | OXALOACETATE DECARBOXYLASE ALPHA CHAIN |
| CAI8009834.1 | |
| CAI8009835.1 | |
| CAI8009838.1 | |
| CAI8009837.1 | |
| CAI8009836.1 | |
| CAI8009839.1 | |
| CAI8009841.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8009840.1 | |
| CAI8009842.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8009843.1 | FORMIN-LIKE PROTEIN |
| CAI8009844.1 | |
| CAI8009845.1 | PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
| CAI8009846.1 | |
| CAI8009848.1 | PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
| CAI8009847.1 | PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
| CAI8009849.1 | NG5 |
| CAI8009850.1 | |
| CAI8009851.1 | CYTOCHROME P450 FAMILY 4 |
| CAI8009852.1 | CYTOCHROME P450 FAMILY 7 |
| CAI8009853.1 | CYTOCHROME P450 FAMILY 7 |
| CAI8009856.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8009855.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8009854.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8009857.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8009858.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8009859.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8009861.1 | MORN REPEAT-CONTAINING PROTEIN 2 |
| CAI8009860.1 | MORN REPEAT-CONTAINING PROTEIN 2 |
| CAI8009862.1 | |
| CAI8009864.1 | DNA LIGASE 4 |
| CAI8009865.1 | DNA LIGASE 4 |
| CAI8009863.1 | |
| CAI8009872.1 | DNA LIGASE 4 |
| CAI8009871.1 | DNA LIGASE 4 |
| CAI8009869.1 | DNA LIGASE 4 |
| CAI8009870.1 | DNA LIGASE 4 |
| CAI8009868.1 | DNA LIGASE 4 |
