Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009671.1 | |
| CAI8009672.1 | |
| CAI8009673.1 | |
| CAI8009675.1 | |
| CAI8009674.1 | |
| CAI8009676.1 | |
| CAI8009677.1 | |
| CAI8009678.1 | |
| CAI8009680.1 | |
| CAI8009679.1 | INTELECTIN |
| CAI8009681.1 | |
| CAI8009682.1 | |
| CAI8009683.1 | CHORISMATE SYNTHASE |
| CAI8009684.1 | CHORISMATE SYNTHASE |
| CAI8009685.1 | CHORISMATE SYNTHASE |
| CAI8009686.1 | CHORISMATE SYNTHASE |
| CAI8009687.1 | CHORISMATE SYNTHASE |
| CAI8009688.1 | CHORISMATE SYNTHASE |
| CAI8009689.1 | CHORISMATE SYNTHASE |
| CAI8009690.1 | CHORISMATE SYNTHASE |
| CAI8009691.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8009692.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8009693.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8009694.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8009695.1 | |
| CAI8009696.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8009697.1 | QUINONE OXIDOREDUCTASE |
| CAI8009698.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8009699.1 | |
| CAI8009700.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8009703.1 | UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED |
| CAI8009701.1 | UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED |
| CAI8009702.1 | UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED |
| CAI8009704.1 | UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED |
| CAI8009705.1 | |
| CAI8009706.1 | ABC TRANSPORTER ATP-BINDING PROTEIN |
| CAI8009707.1 | UDP-N-ACETYL-2-AMINO-2-DEOXY-D-GLUCURONATE OXIDASE |
| CAI8009708.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8009709.1 | BCDNA.GH03377 |
| CAI8009710.1 | |
| CAI8009711.1 | |
| CAI8009712.1 | |
| CAI8009713.1 | |
| CAI8009714.1 | |
| CAI8009715.1 | HEMIN IMPORT ATP-BINDING PROTEIN HMUV |
| CAI8009716.1 | D-XYLOSE-BINDING PERIPLASMIC PROTEIN |
| CAI8009717.1 | |
| CAI8009718.1 | SLL1037 PROTEIN |
| CAI8009719.1 | ALKANE SULFONATE ABC TRANSPORTER-RELATED, MEMBRANE SUBUNIT |
| CAI8009720.1 | 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE PHOSPHATE SYNTHASE THI11-RELATED |
