Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009621.1 | ALDEHYDE DEHYDROGENASE |
| CAI8009622.1 | |
| CAI8009623.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8009628.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8009627.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8009626.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8009625.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8009624.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8009629.1 | TRANSMEMBRANE PROTEIN 256 |
| CAI8009630.1 | |
| CAI8009631.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8009632.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8009633.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8009634.1 | RNA POLYMERASE ECF-TYPE SIGMA FACTO |
| CAI8009635.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI8009636.1 | SCP160 |
| CAI8009638.1 | |
| CAI8009637.1 | |
| CAI8009639.1 | |
| CAI8009640.1 | |
| CAI8009642.1 | 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED |
| CAI8009643.1 | 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED |
| CAI8009641.1 | 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED |
| CAI8009644.1 | HOMOACONITASE, MITOCHONDRIAL-RELATED |
| CAI8009645.1 | METHIONINE SYNTHASE |
| CAI8009646.1 | METHIONINE SYNTHASE |
| CAI8009647.1 | TRANSPOSASE |
| CAI8009648.1 | |
| CAI8009649.1 | |
| CAI8009650.1 | SERINE/THREONINE-PROTEIN KINASE PIM |
| CAI8009655.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
| CAI8009654.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
| CAI8009653.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
| CAI8009652.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
| CAI8009651.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8009656.1 | CARBONYL REDUCTASE 1-RELATED |
| CAI8009658.1 | OTU DOMAIN CONTAINING PROTEIN |
| CAI8009657.1 | OTU DOMAIN CONTAINING PROTEIN |
| CAI8009659.1 | |
| CAI8009661.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| CAI8009660.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| CAI8009662.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| CAI8009663.1 | SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN |
| CAI8009664.1 | VALACYCLOVIR HYDROLASE |
| CAI8009666.1 | ALPHA-PROTEIN KINASE VWKA |
| CAI8009665.1 | ALPHA-PROTEIN KINASE VWKA |
| CAI8009667.1 | ALPHA-PROTEIN KINASE VWKA |
| CAI8009668.1 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
| CAI8009669.1 | |
| CAI8009670.1 |
