Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009321.1 | ELONGATION FACTOR TS |
| CAI8009322.1 | ELONGATION FACTOR TS |
| CAI8009323.1 | PRIMOSOMAL PROTEIN N |
| CAI8009324.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI8009325.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009328.1 | THUMP DOMAIN CONTAINING PROTEIN 1-RELATED |
| CAI8009327.1 | |
| CAI8009326.1 | THUMP DOMAIN CONTAINING PROTEIN 1-RELATED |
| CAI8009331.1 | THUMP DOMAIN CONTAINING PROTEIN 1-RELATED |
| CAI8009330.1 | THUMP DOMAIN CONTAINING PROTEIN 1-RELATED |
| CAI8009329.1 | |
| CAI8009332.1 | DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA' |
| CAI8009335.1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
| CAI8009334.1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
| CAI8009333.1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
| CAI8009336.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8009337.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8009338.1 | |
| CAI8009339.1 | CELL DIVISION CYCLE 16,23,27 |
| CAI8009345.1 | |
| CAI8009346.1 | |
| CAI8009340.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8009341.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8009342.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8009343.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8009344.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8009347.1 | |
| CAI8009348.1 | NF-E2 INDUCIBLE PROTEIN |
| CAI8009349.1 | NF-E2 INDUCIBLE PROTEIN |
| CAI8009352.1 | NF-E2 INDUCIBLE PROTEIN |
| CAI8009351.1 | NF-E2 INDUCIBLE PROTEIN |
| CAI8009350.1 | NF-E2 INDUCIBLE PROTEIN |
| CAI8009353.1 | |
| CAI8009354.1 | |
| CAI8009355.1 | |
| CAI8009356.1 | |
| CAI8009357.1 | |
| CAI8009358.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8009359.1 | |
| CAI8009360.1 | |
| CAI8009362.1 | |
| CAI8009363.1 | |
| CAI8009361.1 | |
| CAI8009364.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8009365.1 | |
| CAI8009368.1 | |
| CAI8009370.1 | |
| CAI8009369.1 | |
| CAI8009367.1 | |
| CAI8009366.1 |
