Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009221.1 | - |
| CAI8009222.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8009224.1 | TBC1 DOMAIN FAMILY MEMBER 20/GTPASE |
| CAI8009225.1 | TBC1 DOMAIN FAMILY MEMBER 20/GTPASE |
| CAI8009223.1 | |
| CAI8009226.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8009227.1 | |
| CAI8009228.1 | |
| CAI8009229.1 | |
| CAI8009230.1 | |
| CAI8009231.1 | |
| CAI8009232.1 | |
| CAI8009234.1 | ACTIN BUNDLING/MISSING IN METASTASIS-RELATED |
| CAI8009235.1 | ACTIN BUNDLING/MISSING IN METASTASIS-RELATED |
| CAI8009233.1 | RIBONUCLEASE P PROTEIN SUBUNIT P40 |
| CAI8009236.1 | |
| CAI8009237.1 | ATM INTERACTOR |
| CAI8009238.1 | ATP-DEPENDENT PROTEASE |
| CAI8009239.1 | ATP-DEPENDENT PROTEASE |
| CAI8009241.1 | COILIN |
| CAI8009240.1 | COILIN |
| CAI8009242.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| CAI8009243.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| CAI8009244.1 | |
| CAI8009245.1 | |
| CAI8009246.1 | |
| CAI8009248.1 | |
| CAI8009247.1 | |
| CAI8009249.1 | |
| CAI8009250.1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
| CAI8009251.1 | TONSOKU-LIKE PROTEIN |
| CAI8009252.1 | TONSOKU-LIKE PROTEIN |
| CAI8009254.1 | MITOCHONDRIAL GENOME MAINTENANCE PROTEIN MGM101 |
| CAI8009253.1 | MITOCHONDRIAL GENOME MAINTENANCE PROTEIN MGM101 |
| CAI8009255.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8009256.1 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1 |
| CAI8009257.1 | SIALIDASE |
| CAI8009260.1 | CENTROMERE PROTEIN T |
| CAI8009259.1 | CENTROMERE PROTEIN T |
| CAI8009261.1 | CENTROMERE PROTEIN T |
| CAI8009258.1 | CENTROMERE PROTEIN T |
| CAI8009262.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8009263.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8009264.1 | |
| CAI8009265.1 | THROMBOSPONDIN |
| CAI8009266.1 | THROMBOSPONDIN |
| CAI8009267.1 | THROMBOSPONDIN |
| CAI8009270.1 | ENDONUCLEASE RELATED |
| CAI8009269.1 | ENDONUCLEASE RELATED |
| CAI8009268.1 | ENDONUCLEASE RELATED |
