About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI7998662.1PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER
CAI7998664.1DEHYDROGENASES, SHORT CHAIN
CAI7998666.1GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
CAI7998668.13-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
CAI7998670.13-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
CAI7998672.1ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
CAI7998674.1GTPASE DER
CAI7998676.1INNER MEMBRANE PROTEIN YGIH
CAI7998678.1GLYCEROL-3-PHOSPHATE DEHYDROGENASE
CAI7998680.1OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC
CAI7998682.1-
CAI7998684.1ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE
CAI7998690.1DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED
CAI7998688.1DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED
CAI7998686.1DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED
CAI7998692.1HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR HRCA
CAI7998696.1RIBOSOMAL PROTEIN S9
CAI7998694.1RIBOSOMAL PROTEIN S9
CAI7998700.1RIBOSOMAL PROTEIN L13
CAI7998698.1RIBOSOMAL PROTEIN L13
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