Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009021.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8009022.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8009023.1 | TRANSAMIDASE |
| CAI8009024.1 | TRANSAMIDASE |
| CAI8009025.1 | SUGAR KINASE |
| CAI8009026.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8009027.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8009028.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8009029.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8009030.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8009031.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8009032.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8009033.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8009034.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8009035.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8009036.1 | INNER MEMBRANE ABC TRANSPORTER |
| CAI8009037.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8009038.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8009039.1 | INOSITOL-3-PHOSPHATE SYNTHASE |
| CAI8009040.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8009041.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8009042.1 | NITROGEN REGULATORY PROTEIN P-II |
| CAI8009043.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8009044.1 | NITROGEN REGULATORY PROTEIN P-II |
| CAI8009045.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8009049.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8009048.1 | FIBRILLIN-RELATED |
| CAI8009047.1 | |
| CAI8009046.1 | |
| CAI8009050.1 | |
| CAI8009051.1 | |
| CAI8009052.1 | |
| CAI8009053.1 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED |
| CAI8009054.1 | |
| CAI8009055.1 | HEPATOMA-DERIVED GROWTH FACTOR-RELATED |
| CAI8009056.1 | GUANYLYL CYCLASE |
| CAI8009057.1 | |
| CAI8009058.1 | |
| CAI8009059.1 | |
| CAI8009060.1 | |
| CAI8009061.1 | TRANSPOSON |
| CAI8009062.1 | USE1-LIKE PROTEIN |
| CAI8009063.1 | USE1-LIKE PROTEIN |
| CAI8009064.1 | |
| CAI8009065.1 | |
| CAI8009067.1 | WDR41-RELATED |
| CAI8009068.1 | WDR41-RELATED |
| CAI8009066.1 | WDR41-RELATED |
| CAI8009069.1 | WDR41-RELATED |
| CAI8009074.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
