Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008721.1 | DOCKING PROTEIN RELATED |
| CAI8008722.1 | DOCKING PROTEIN RELATED |
| CAI8008726.1 | SODIUM/HYDROGEN EXCHANGER |
| CAI8008725.1 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
| CAI8008724.1 | |
| CAI8008723.1 | |
| CAI8008727.1 | SODIUM/HYDROGEN EXCHANGER |
| CAI8008728.1 | TGF-BETA FAMILY |
| CAI8008729.1 | TGF-BETA FAMILY |
| CAI8008730.1 | SERINE/THREONINE PROTEIN KINASE |
| CAI8008731.1 | SERINE/THREONINE PROTEIN KINASE |
| CAI8008732.1 | SERINE/THREONINE PROTEIN KINASE |
| CAI8008734.1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| CAI8008733.1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| CAI8008736.1 | |
| CAI8008735.1 | |
| CAI8008737.1 | THIOREDOXIN-LIKE PROTEN 4A, 4B |
| CAI8008738.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8008739.1 | LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 |
| CAI8008741.1 | MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 |
| CAI8008740.1 | MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 |
| CAI8008744.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 |
| CAI8008743.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 |
| CAI8008742.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 |
| CAI8008745.1 | |
| CAI8008746.1 | SURFEIT LOCUS PROTEIN 2 |
| CAI8008747.1 | VALYL-TRNA SYNTHETASES |
| CAI8008748.1 | |
| CAI8008749.1 | |
| CAI8008750.1 | |
| CAI8008751.1 | NUCLEOLAR PROTEIN 9 |
| CAI8008753.1 | NUCLEOLAR PROTEIN 9 |
| CAI8008752.1 | NUCLEOLAR PROTEIN 9 |
| CAI8008754.1 | |
| CAI8008755.1 | PHOSPHATIDYLINOSITOL KINASE |
| CAI8008756.1 | SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN |
| CAI8008758.1 | UBIQUITIN-LIKE PROTEIN 4A |
| CAI8008757.1 | UBIQUITIN-LIKE PROTEIN 4A |
| CAI8008759.1 | UBIQUILIN |
| CAI8008760.1 | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED |
| CAI8008761.1 | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED |
| CAI8008762.1 | TRNA PSEUDOURIDINE SYNTHASE D |
| CAI8008763.1 | TRNA PSEUDOURIDINE SYNTHASE D |
| CAI8008765.1 | GLUTATHIONE REDUCTASE |
| CAI8008764.1 | GLUTATHIONE REDUCTASE |
| CAI8008766.1 | GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1 |
| CAI8008767.1 | |
| CAI8008768.1 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
| CAI8008771.1 | IMPORTIN ALPHA |
| CAI8008772.1 | IMPORTIN ALPHA |
