About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI7998058.1RIIA DOMAIN-CONTAINING PROTEIN 1
CAI7998060.1ZINC FINGER PROTEIN
CAI7998064.1PR DOMAIN ZINC FINGER PROTEIN
CAI7998062.1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
CAI7998094.13-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED
CAI7998096.1DNA GYRASE/TOPOISOMERASE SUBUNIT B
CAI7998098.1HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE
CAI7998100.1GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)
CAI7998102.1PROPIONYL-COA CARBOXYLASE BETA CHAIN
CAI7998104.1PROPIONYL-COA CARBOXYLASE BETA CHAIN
CAI7998110.1PROPIONYL-COA CARBOXYLASE BETA CHAIN
CAI7998106.1PROPIONYL-COA CARBOXYLASE BETA CHAIN
CAI7998108.1PROPIONYL-COA CARBOXYLASE BETA CHAIN
CAI7998112.1PROPIONYL-COA CARBOXYLASE BETA CHAIN
CAI7998114.1PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED
CAI7998118.1L-THREONINE ALDOLASE-RELATED
CAI7998116.1L-THREONINE ALDOLASE-RELATED
CAI7998122.1GLUTAMINE-TRNA LIGASE
CAI7998120.1GLUTAMINE-TRNA LIGASE
CAI7998124.1GLUTAMINE-TRNA LIGASE
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