Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008621.1 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| CAI8008622.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
| CAI8008623.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
| CAI8008624.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
| CAI8008625.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8008626.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8008627.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8008628.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8008629.1 | |
| CAI8008630.1 | |
| CAI8008631.1 | |
| CAI8008632.1 | |
| CAI8008633.1 | |
| CAI8008636.1 | |
| CAI8008635.1 | |
| CAI8008634.1 | |
| CAI8008637.1 | |
| CAI8008638.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8008639.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8008640.1 | LD33804P |
| CAI8008641.1 | |
| CAI8008642.1 | |
| CAI8008643.1 | |
| CAI8008644.1 | |
| CAI8008645.1 | |
| CAI8008646.1 | |
| CAI8008647.1 | |
| CAI8008648.1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| CAI8008649.1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| CAI8008650.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8008651.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8008652.1 | PEPTIDASE T |
| CAI8008653.1 | |
| CAI8008654.1 | |
| CAI8008655.1 | STAGE II SPORULATION PROTEIN E-RELATED |
| CAI8008656.1 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED |
| CAI8008657.1 | AAA FAMILY ATPASE |
| CAI8008658.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8008659.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8008660.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8008661.1 | |
| CAI8008662.1 | |
| CAI8008663.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8008664.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8008665.1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| CAI8008666.1 | |
| CAI8008667.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8008668.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8008669.1 | |
| CAI8008672.1 | HISTONE DEACETYLASE HDAC1-RELATED |
