Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008571.1 | |
| CAI8008572.1 | UNCHARACTERIZED |
| CAI8008573.1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
| CAI8008574.1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
| CAI8008575.1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
| CAI8008576.1 | 2-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE |
| CAI8008578.1 | BONUS, ISOFORM C-RELATED |
| CAI8008577.1 | BONUS, ISOFORM C-RELATED |
| CAI8008579.1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| CAI8008581.1 | PROTEASOME INHIBITOR |
| CAI8008582.1 | PROTEASOME INHIBITOR |
| CAI8008580.1 | PROTEASOME INHIBITOR |
| CAI8008583.1 | PROTEASOME INHIBITOR |
| CAI8008584.1 | |
| CAI8008585.1 | |
| CAI8008586.1 | |
| CAI8008587.1 | BTB DOMAIN-CONTAINING PROTEIN |
| CAI8008588.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8008589.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8008590.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8008594.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8008593.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8008592.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8008591.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8008595.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8008596.1 | PURPLE ACID PHOSPHATASE-RELATED |
| CAI8008597.1 | WD40 REPEAT PROTEIN |
| CAI8008598.1 | WD40 REPEAT PROTEIN |
| CAI8008599.1 | WD40 REPEAT PROTEIN |
| CAI8008600.1 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 4 HOMOLOG |
| CAI8008601.1 | REGULATOR-RELATED |
| CAI8008602.1 | |
| CAI8008603.1 | |
| CAI8008604.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8008605.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8008606.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8008609.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8008608.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8008607.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8008610.1 | IRON-SULFUR CLUSTER-BINDING PROTEIN-RELATED |
| CAI8008611.1 | UNCHARACTERIZED |
| CAI8008612.1 | BLR0278 PROTEIN |
| CAI8008613.1 | GDP-MANNOSE MANNOSYL HYDROLASE |
| CAI8008614.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8008615.1 | DUDULIN-RELATED |
| CAI8008616.1 | |
| CAI8008617.1 | |
| CAI8008618.1 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
| CAI8008619.1 | ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR |
| CAI8008620.1 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
