Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008321.1 | DNA POLYMERASE I |
| CAI8008322.1 | DNA POLYMERASE I |
| CAI8008323.1 | |
| CAI8008324.1 | FLAP ENDONUCLEASE XNI |
| CAI8008325.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
| CAI8008326.1 | |
| CAI8008327.1 | |
| CAI8008328.1 | |
| CAI8008330.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8008329.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8008331.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8008332.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8008333.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8008334.1 | |
| CAI8008336.1 | SYNAPTOBREVIN FAMILY MEMBER |
| CAI8008335.1 | SYNAPTOBREVIN FAMILY MEMBER |
| CAI8008338.1 | |
| CAI8008337.1 | |
| CAI8008339.1 | |
| CAI8008340.1 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA |
| CAI8008341.1 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA |
| CAI8008342.1 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA |
| CAI8008343.1 | BCAS2 PROTEIN |
| CAI8008344.1 | BCAS2 PROTEIN |
| CAI8008345.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8008350.1 | DEOXYNUCLEOSIDE KINASE |
| CAI8008349.1 | DEOXYNUCLEOSIDE KINASE |
| CAI8008347.1 | DEOXYNUCLEOSIDE KINASE |
| CAI8008348.1 | DEOXYNUCLEOSIDE KINASE |
| CAI8008346.1 | DEOXYNUCLEOSIDE KINASE |
| CAI8008351.1 | DEOXYNUCLEOSIDE KINASE |
| CAI8008354.1 | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED |
| CAI8008355.1 | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED |
| CAI8008353.1 | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED |
| CAI8008352.1 | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED |
| CAI8008356.1 | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED |
| CAI8008357.1 | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED |
| CAI8008359.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8008358.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8008360.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8008361.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8008365.1 | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA |
| CAI8008364.1 | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA |
| CAI8008363.1 | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA |
| CAI8008362.1 | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA |
| CAI8008366.1 | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA |
| CAI8008367.1 | UNCHARACTERIZED PROTEIN YVCK-RELATED |
| CAI8008368.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8008372.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8008371.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
