Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008116.1 | PERIODIC TRYPTOPHAN PROTEIN 1 |
| CAI8008122.1 | PERIODIC TRYPTOPHAN PROTEIN 1 |
| CAI8008123.1 | PERIODIC TRYPTOPHAN PROTEIN 1 |
| CAI8008124.1 | CEROID-LIPOFUSCINOSIS NEURONAL PROTEIN 6 |
| CAI8008125.1 | CEROID-LIPOFUSCINOSIS NEURONAL PROTEIN 6 |
| CAI8008126.1 | - |
| CAI8008127.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8008128.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8008129.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8008130.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8008131.1 | |
| CAI8008132.1 | BETA-ALANINE-ACTIVATING ENZYME |
| CAI8008133.1 | BETA-ALANINE-ACTIVATING ENZYME |
| CAI8008134.1 | |
| CAI8008135.1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| CAI8008136.1 | GEO07743P1 |
| CAI8008137.1 | |
| CAI8008138.1 | |
| CAI8008139.1 | |
| CAI8008140.1 | |
| CAI8008141.1 | RAB6A-GEF COMPLEX PARTNER PROTEIN 1 |
| CAI8008142.1 | MYOSIN |
| CAI8008146.1 | ACYL-COA-BINDING PROTEIN, ACBP |
| CAI8008145.1 | ACYL-COA-BINDING PROTEIN, ACBP |
| CAI8008144.1 | ACYL-COA-BINDING PROTEIN, ACBP |
| CAI8008143.1 | ACYL-COA-BINDING PROTEIN, ACBP |
| CAI8008147.1 | |
| CAI8008149.1 | ACYL-COA-BINDING PROTEIN, ACBP |
| CAI8008148.1 | |
| CAI8008150.1 | ACYL-COA-BINDING PROTEIN, ACBP |
| CAI8008154.1 | CADHERIN-23 |
| CAI8008153.1 | CADHERIN-23 |
| CAI8008152.1 | CADHERIN-23 |
| CAI8008151.1 | HEDGEHOG |
| CAI8008156.1 | CADHERIN-23 |
| CAI8008155.1 | CADHERIN-23 |
| CAI8008157.1 | CADHERIN-23 |
| CAI8008158.1 | CADHERIN-23 |
| CAI8008159.1 | |
| CAI8008160.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8008161.1 | PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12 |
| CAI8008162.1 | PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12 |
| CAI8008163.1 | PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12 |
| CAI8008167.1 | COLLAGEN ALPHA |
| CAI8008165.1 | COLLAGEN ALPHA |
| CAI8008166.1 | COLLAGEN ALPHA |
| CAI8008164.1 | COLLAGEN ALPHA |
| CAI8008168.1 | COLLAGEN ALPHA |
| CAI8008171.1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 4 |
| CAI8008169.1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 4 |
