Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008222.1 | SYNPHILIN-1 |
| CAI8008221.1 | |
| CAI8008223.1 | |
| CAI8008224.1 | CLUSTERIN ASSOCIATED PROTEIN 1 |
| CAI8008225.1 | AMIDINOTRANSFERASE |
| CAI8008228.1 | TRANSMEMBRANE PROTEIN 249 |
| CAI8008227.1 | TRANSMEMBRANE PROTEIN 249 |
| CAI8008226.1 | |
| CAI8008230.1 | PROTEIN TRANSPORT PROTEIN SEC23 |
| CAI8008229.1 | PROTEIN TRANSPORT PROTEIN SEC23 |
| CAI8008232.1 | PROTEIN TRANSPORT PROTEIN SEC23 |
| CAI8008231.1 | PROTEIN TRANSPORT PROTEIN SEC23 |
| CAI8008234.1 | PROTEIN TRANSPORT PROTEIN SEC23 |
| CAI8008233.1 | PROTEIN TRANSPORT PROTEIN SEC23 |
| CAI8008237.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| CAI8008236.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| CAI8008235.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| CAI8008239.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| CAI8008238.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| CAI8008240.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| CAI8008242.1 | NECTIN-RELATED |
| CAI8008241.1 | INTERFERON/INTERLEUKIN RECEPTOR |
| CAI8008243.1 | BONUS, ISOFORM C-RELATED |
| CAI8008245.1 | ATP SYNTHASE GAMMA-RELATED |
| CAI8008246.1 | ATP SYNTHASE GAMMA-RELATED |
| CAI8008244.1 | ATP SYNTHASE GAMMA-RELATED |
| CAI8008247.1 | ATP SYNTHASE GAMMA-RELATED |
| CAI8008249.1 | ATP SYNTHASE GAMMA-RELATED |
| CAI8008248.1 | ATP SYNTHASE GAMMA-RELATED |
| CAI8008250.1 | |
| CAI8008251.1 | |
| CAI8008252.1 | |
| CAI8008253.1 | |
| CAI8008254.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8008255.1 | SLR0755 PROTEIN |
| CAI8008257.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI8008256.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI8008258.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8008261.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI8008260.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI8008259.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI8008262.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8008263.1 | |
| CAI8008264.1 | RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR |
| CAI8008265.1 | FERREDOXIN-RELATED |
| CAI8008266.1 | SIGNAL PEPTIDASE I |
| CAI8008267.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8008268.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8008269.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8008273.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
