Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008021.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8008022.1 | GTP CYCLOHYDROLASE I |
| CAI8008023.1 | |
| CAI8008024.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8008025.1 | COV-LIKE PROTEIN 1 |
| CAI8008026.1 | ACETYLTRANSFERASE |
| CAI8008027.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8008028.1 | TYROSINE-PROTEIN PHOSPHATASE YWQE |
| CAI8008029.1 | HEME OXYGENASE HI_0854-RELATED |
| CAI8008030.1 | KINASE-RELATED |
| CAI8008031.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8008033.1 | MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB |
| CAI8008032.1 | MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB |
| CAI8008034.1 | MOLYBDATE-BINDING PERIPLASMIC PROTEIN |
| CAI8008035.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
| CAI8008036.1 | |
| CAI8008037.1 | OXIDOREDUCTASE-RELATED |
| CAI8008038.1 | |
| CAI8008039.1 | MAGNESIUM TRANSPORTER MGTE |
| CAI8008040.1 | MAGNESIUM TRANSPORTER MGTE |
| CAI8008041.1 | |
| CAI8008042.1 | COV-LIKE PROTEIN 1 |
| CAI8008043.1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| CAI8008044.1 | DNA PRIMASE |
| CAI8008045.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8008046.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8008047.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8008048.1 | |
| CAI8008049.1 | |
| CAI8008050.1 | |
| CAI8008051.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI8008052.1 | |
| CAI8008053.1 | |
| CAI8008054.1 | |
| CAI8008055.1 | TYROSINE-PROTEIN KINASE |
| CAI8008056.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8008057.1 | |
| CAI8008058.1 | |
| CAI8008059.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8008063.1 | |
| CAI8008062.1 | |
| CAI8008061.1 | |
| CAI8008060.1 | |
| CAI8008065.1 | |
| CAI8008064.1 | |
| CAI8008066.1 | |
| CAI8008068.1 | |
| CAI8008067.1 | |
| CAI8008074.1 | GLUTAMINASE A-RELATED |
| CAI8008071.1 | GLUTAMINASE A-RELATED |
