Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007769.1 | SESQUIPEDALIAN |
| CAI8007774.1 | SESQUIPEDALIAN |
| CAI8007771.1 | SESQUIPEDALIAN |
| CAI8007772.1 | SESQUIPEDALIAN |
| CAI8007775.1 | |
| CAI8007777.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8007776.1 | NICASTRIN |
| CAI8007778.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8007779.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8007780.1 | |
| CAI8007781.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8007782.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8007783.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8007784.1 | OXIDOREDUCTASE-RELATED |
| CAI8007785.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8007786.1 | |
| CAI8007787.1 | ANTITOXIN HIGA-1 |
| CAI8007788.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8007789.1 | HEME OXYGENASE HI_0854-RELATED |
| CAI8007790.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8007791.1 | LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 1, CHLOROPLASTIC |
| CAI8007792.1 | 50S RIBOSOMAL PROTEIN L32 |
| CAI8007793.1 | MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL |
| CAI8007794.1 | ACYL CARRIER PROTEIN |
| CAI8007795.1 | ACYL CARRIER PROTEIN |
| CAI8007796.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8007797.1 | POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN |
| CAI8007798.1 | ALANYL-TRNA SYNTHETASE |
| CAI8007799.1 | AMINOTRANSFERASE |
| CAI8007800.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8007801.1 | QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED |
| CAI8007802.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8007803.1 | TRANSMEMBRANE PROTEIN 256 |
| CAI8007804.1 | ANTITOXIN HIGA-1 |
| CAI8007805.1 | TRANSAMIDASE |
| CAI8007806.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8007807.1 | FAD-BINDING PROTEIN |
| CAI8007808.1 | |
| CAI8007809.1 | METHYLTRANSFERASE |
| CAI8007810.1 | ADENYLOSUCCINATE LYASE |
| CAI8007811.1 | H2HPP ISOMERASE |
| CAI8007813.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8007812.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8007814.1 | |
| CAI8007815.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8007816.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8007817.1 | UPF0331 PROTEIN MJ0127 |
| CAI8007818.1 | |
| CAI8007819.1 | |
| CAI8007820.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
