Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007471.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8007472.1 | |
| CAI8007473.1 | |
| CAI8007481.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8007483.1 | |
| CAI8007482.1 | |
| CAI8007480.1 | |
| CAI8007484.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8007479.1 | |
| CAI8007477.1 | |
| CAI8007476.1 | |
| CAI8007475.1 | |
| CAI8007478.1 | |
| CAI8007474.1 | |
| CAI8007485.1 | |
| CAI8007486.1 | |
| CAI8007487.1 | |
| CAI8007488.1 | |
| CAI8007489.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8007492.1 | |
| CAI8007491.1 | |
| CAI8007490.1 | |
| CAI8007493.1 | |
| CAI8007494.1 | EPH RECEPTOR A5 |
| CAI8007495.1 | PEPTIDASE S12 |
| CAI8007496.1 | METHYLTRANSFERASE |
| CAI8007497.1 | ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER |
| CAI8007498.1 | |
| CAI8007500.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007499.1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
| CAI8007501.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007502.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007503.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007504.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007505.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8007506.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8007507.1 | RIBONUCLEASE VAPC13 |
| CAI8007508.1 | |
| CAI8007509.1 | DNA RECOMBINATION PROTEIN RMUC |
| CAI8007510.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8007511.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8007512.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8007513.1 | ANTITOXIN HICB |
| CAI8007514.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8007515.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8007516.1 | PHOSPHOMETHYLPYRIMIDINE KINASE |
| CAI8007517.1 | PHOSPHOMETHYLPYRIMIDINE KINASE |
| CAI8007518.1 | SLL0198 PROTEIN-RELATED |
| CAI8007519.1 | HOMOSERINE DEHYDROGENASE |
| CAI8007520.1 |
