Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007271.1 | |
| CAI8007272.1 | |
| CAI8007273.1 | |
| CAI8007274.1 | EPOXYQUEUOSINE REDUCTASE |
| CAI8007275.1 | IRON (METAL) DEPENDENT REPRESSOR, DTXR FAMILY |
| CAI8007276.1 | |
| CAI8007277.1 | RIBOSOMAL PROTEIN S9 |
| CAI8007279.1 | |
| CAI8007278.1 | |
| CAI8007281.1 | RIBOSOMAL PROTEIN L13 |
| CAI8007280.1 | RIBOSOMAL PROTEIN L13 |
| CAI8007282.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8007283.1 | RIBOSOMAL PROTEIN L17 |
| CAI8007285.1 | |
| CAI8007286.1 | |
| CAI8007284.1 | |
| CAI8007287.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI8007288.1 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 |
| CAI8007290.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8007289.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8007291.1 | |
| CAI8007292.1 | 50S RIBOSOMAL PROTEIN L36, CHLOROPLASTIC |
| CAI8007293.1 | TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC |
| CAI8007294.1 | METHIONINE AMINOPEPTIDASE |
| CAI8007295.1 | NUCLEOTIDE KINASE |
| CAI8007296.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8007297.1 | 50S RIBOSOMAL PROTEIN L15 |
| CAI8007299.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8007298.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8007300.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
| CAI8007301.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
| CAI8007302.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8007303.1 | 40S RIBOSOMAL PROTEIN S15A |
| CAI8007306.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8007305.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8007304.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8007307.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI8007308.1 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
| CAI8007309.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI8007310.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8007315.1 | |
| CAI8007314.1 | |
| CAI8007313.1 | |
| CAI8007312.1 | |
| CAI8007311.1 | |
| CAI8007317.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8007316.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8007318.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8007319.1 | BTK-BINDING PROTEIN-RELATED |
| CAI8007320.1 | BTK-BINDING PROTEIN-RELATED |
