Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007421.1 | |
| CAI8007422.1 | PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED |
| CAI8007423.1 | |
| CAI8007427.1 | TYPE III PANTOTHENATE KINASE |
| CAI8007426.1 | TYPE III PANTOTHENATE KINASE |
| CAI8007424.1 | TYPE III PANTOTHENATE KINASE |
| CAI8007425.1 | TYPE III PANTOTHENATE KINASE |
| CAI8007428.1 | TYPE III PANTOTHENATE KINASE |
| CAI8007429.1 | |
| CAI8007430.1 | HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY |
| CAI8007431.1 | SULFATE TRANSPORTER |
| CAI8007432.1 | |
| CAI8007433.1 | - |
| CAI8007434.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8007436.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8007435.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8007437.1 | |
| CAI8007438.1 | |
| CAI8007439.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8007440.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8007441.1 | |
| CAI8007442.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8007443.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8007444.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8007445.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8007446.1 | 30S RIBOSOMAL PROTEIN S1 |
| CAI8007447.1 | 30S RIBOSOMAL PROTEIN S1 |
| CAI8007448.1 | |
| CAI8007449.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8007450.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8007451.1 | |
| CAI8007452.1 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE |
| CAI8007453.1 | METAL-DEPENDENT PHOSPHOHYDROLASE |
| CAI8007454.1 | |
| CAI8007455.1 | |
| CAI8007456.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8007457.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8007458.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8007461.1 | PEPTIDE DEFORMYLASE |
| CAI8007460.1 | PEPTIDE DEFORMYLASE |
| CAI8007459.1 | PEPTIDE DEFORMYLASE |
| CAI8007463.1 | RIBOSOMAL PROTEIN L19 |
| CAI8007462.1 | RIBOSOMAL PROTEIN L19 |
| CAI8007464.1 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| CAI8007465.1 | |
| CAI8007466.1 | XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED |
| CAI8007470.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8007469.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8007468.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8007467.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
