Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007121.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8007122.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8007123.1 | UNCHARACTERIZED PROTEIN YVCK-RELATED |
| CAI8007124.1 | |
| CAI8007125.1 | CHLORINASE MJ1651 |
| CAI8007126.1 | HISTIDINE TRIAD HIT PROTEIN |
| CAI8007127.1 | TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE |
| CAI8007128.1 | GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 |
| CAI8007129.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE-RELATED |
| CAI8007130.1 | DNA PRIMASE |
| CAI8007131.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8007136.1 | CELL DIVISION PROTEIN FTSZ-RELATED |
| CAI8007134.1 | CELL DIVISION PROTEIN FTSZ-RELATED |
| CAI8007133.1 | CELL DIVISION PROTEIN FTSZ-RELATED |
| CAI8007132.1 | CELL DIVISION PROTEIN FTSZ-RELATED |
| CAI8007135.1 | CELL DIVISION PROTEIN FTSZ-RELATED |
| CAI8007137.1 | CELL DIVISION PROTEIN FTSZ-RELATED |
| CAI8007138.1 | UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED |
| CAI8007139.1 | CELL CYCLE PROTEIN |
| CAI8007140.1 | UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE |
| CAI8007141.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI8007142.1 | UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE |
| CAI8007143.1 | MUR LIGASE FAMILY MEMBER |
| CAI8007144.1 | PEPTIDOGLYCAN D,D-TRANSPEPTIDASE |
| CAI8007149.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8007148.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8007147.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8007146.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8007145.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8007150.1 | |
| CAI8007151.1 | TRANSCRIPTIONAL REGULATOR MRAZ |
| CAI8007152.1 | SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ |
| CAI8007153.1 | SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ |
| CAI8007154.1 | HOMOSERINE DEHYDROGENASE |
| CAI8007155.1 | |
| CAI8007156.1 | POLY(3-HYDROXYALKANOATE) POLYMERASE SUBUNIT PHAC |
| CAI8007157.1 | POLY(3-HYDROXYALKANOATE) POLYMERASE SUBUNIT PHAC |
| CAI8007158.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8007164.1 | RIBOSOMAL PROTEIN S9 |
| CAI8007163.1 | RIBOSOMAL PROTEIN S9 |
| CAI8007162.1 | RIBOSOMAL PROTEIN S9 |
| CAI8007161.1 | RIBOSOMAL PROTEIN S9 |
| CAI8007160.1 | RIBOSOMAL PROTEIN S9 |
| CAI8007159.1 | RIBOSOMAL PROTEIN S9 |
| CAI8007166.1 | RIBOSOMAL PROTEIN L13 |
| CAI8007165.1 | RIBOSOMAL PROTEIN L13 |
| CAI8007167.1 | DNA POLYMERASE I |
| CAI8007168.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8007169.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8007170.1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
