Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006921.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8006922.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8006923.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8006924.1 | |
| CAI8006927.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8006926.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8006925.1 | |
| CAI8006928.1 | MULTI-COPPER OXIDASE |
| CAI8006929.1 | XANTHINE DEHYDROGENASE |
| CAI8006930.1 | MULTI-COPPER OXIDASE |
| CAI8006931.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8006932.1 | |
| CAI8006933.1 | |
| CAI8006934.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8006935.1 | TRYPTOPHAN BIOSYNTHESIS PROTEIN |
| CAI8006936.1 | UNCHARACTERIZED |
| CAI8006938.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8006937.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8006939.1 | HOMEOBOX PROTEIN ARISTALESS |
| CAI8006940.1 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE |
| CAI8006941.1 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE |
| CAI8006942.1 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE |
| CAI8006943.1 | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE |
| CAI8006946.1 | CYTIDYLYLTRANSFERASE |
| CAI8006945.1 | CYTIDYLYLTRANSFERASE |
| CAI8006944.1 | CYTIDYLYLTRANSFERASE |
| CAI8006947.1 | CYTIDYLYLTRANSFERASE |
| CAI8006948.1 | LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN |
| CAI8006949.1 | LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN |
| CAI8006950.1 | WD REPEAT DOMAIN 44 |
| CAI8006953.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8006952.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8006951.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8006954.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8006955.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8006956.1 | GUANYLYL CYCLASE |
| CAI8006957.1 | OXA1 |
| CAI8006958.1 | |
| CAI8006960.1 | MULTIDRUG RESISTANCE PROTEIN |
| CAI8006961.1 | |
| CAI8006959.1 | MULTIDRUG RESISTANCE PROTEIN |
| CAI8006963.1 | AP COMPLEX SUBUNIT MU |
| CAI8006962.1 | AP COMPLEX SUBUNIT MU |
| CAI8006964.1 | |
| CAI8006966.1 | |
| CAI8006965.1 | |
| CAI8006967.1 | |
| CAI8006969.1 | |
| CAI8006968.1 | |
| CAI8006970.1 |
