Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006871.1 | |
| CAI8006873.1 | ABL INTERACTOR FAMILY MEMBER |
| CAI8006872.1 | ABL INTERACTOR FAMILY MEMBER |
| CAI8006874.1 | RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F |
| CAI8006875.1 | SH3 DOMAIN-CONTAINING |
| CAI8006876.1 | |
| CAI8006877.1 | NACHT DOMAIN-CONTAINING PROTEIN |
| CAI8006878.1 | |
| CAI8006879.1 | |
| CAI8006880.1 | RIBOSOMAL PROTEIN L19 |
| CAI8006881.1 | |
| CAI8006882.1 | |
| CAI8006883.1 | TRANSMEMBRANE PROTEIN 198 FAMILY MEMBER |
| CAI8006884.1 | RHO FAMILY GTPASE |
| CAI8006886.1 | PROTEIN DISPATCHED HOMOLOG 3 |
| CAI8006885.1 | PROTEIN DISPATCHED HOMOLOG 3 |
| CAI8006887.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8006890.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI8006889.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI8006888.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI8006891.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI8006896.1 | RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8006895.1 | RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8006894.1 | RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8006893.1 | ADP RIBOSYLATION FACTOR-RELATED |
| CAI8006892.1 | ADP RIBOSYLATION FACTOR-RELATED |
| CAI8006897.1 | RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8006899.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8006898.1 | CYTOKINE RECEPTOR |
| CAI8006902.1 | CYTOKINE RECEPTOR |
| CAI8006901.1 | CYTOKINE RECEPTOR |
| CAI8006900.1 | |
| CAI8006903.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8006904.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8006905.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8006906.1 | |
| CAI8006907.1 | |
| CAI8006912.1 | THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16 |
| CAI8006911.1 | THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16 |
| CAI8006910.1 | THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16 |
| CAI8006909.1 | THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16 |
| CAI8006908.1 | |
| CAI8006914.1 | THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16 |
| CAI8006913.1 | THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16 |
| CAI8006915.1 | |
| CAI8006916.1 | |
| CAI8006917.1 | |
| CAI8006918.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8006919.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8006920.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
