Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006571.1 | |
| CAI8006572.1 | |
| CAI8006573.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC |
| CAI8006575.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC |
| CAI8006574.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC |
| CAI8006576.1 | TAIL-SPECIFIC PROTEASE |
| CAI8006577.1 | TAIL-SPECIFIC PROTEASE |
| CAI8006578.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8006579.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8006580.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8006581.1 | BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA |
| CAI8006582.1 | RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED |
| CAI8006591.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8006590.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8006589.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8006588.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8006587.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8006586.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8006584.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8006585.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8006583.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8006592.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8006593.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8006594.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8006595.1 | PEPTIDASE S12 |
| CAI8006596.1 | NAD KINASE |
| CAI8006597.1 | |
| CAI8006599.1 | FARNESYL DIPHOSPHATE SYNTHASE |
| CAI8006598.1 | FARNESYL DIPHOSPHATE SYNTHASE |
| CAI8006600.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8006601.1 | 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE |
| CAI8006603.1 | TRANSAMIDASE |
| CAI8006604.1 | TRANSAMIDASE |
| CAI8006602.1 | TRANSAMIDASE |
| CAI8006608.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8006607.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8006606.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8006605.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8006609.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI8006610.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI8006611.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8006612.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8006613.1 | RIBOSOME MATURATION PROTEIN SBDS |
| CAI8006614.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8006615.1 | RECOMBINATION PROTEIN RECR |
| CAI8006616.1 | RECOMBINATION PROTEIN RECR |
| CAI8006617.1 | RECOMBINATION PROTEIN RECR |
| CAI8006618.1 | RECOMBINATION PROTEIN RECR |
| CAI8006619.1 | RECOMBINATION PROTEIN RECR |
| CAI8006620.1 |
