Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006371.1 | |
| CAI8006372.1 | |
| CAI8006373.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI8006374.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI8006375.1 | |
| CAI8006376.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8006377.1 | IDURONATE 2-SULFATASE |
| CAI8006378.1 | |
| CAI8006379.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
| CAI8006380.1 | IDURONATE 2-SULFATASE |
| CAI8006383.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8006382.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8006381.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8006384.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8006385.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8006386.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8006387.1 | - |
| CAI8006388.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8006389.1 | CONSERVED EXPRESSED OXIDOREDUCTASE (EUROFUNG) |
| CAI8006390.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI8006391.1 | GUANYLATE KINASE-RELATED |
| CAI8006392.1 | ADENYLYLSULFATE REDUCTASE, BETA SUBUNIT |
| CAI8006393.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8006394.1 | |
| CAI8006395.1 | BLL7424 PROTEIN |
| CAI8006396.1 | |
| CAI8006399.1 | CYTOCHROME B |
| CAI8006398.1 | CYTOCHROME B |
| CAI8006397.1 | CYTOCHROME B |
| CAI8006400.1 | |
| CAI8006401.1 | CYTOCHROME D UBIQUINOL OXIDASE |
| CAI8006402.1 | L-THREONINE ALDOLASE-RELATED |
| CAI8006403.1 | L-THREONINE ALDOLASE-RELATED |
| CAI8006404.1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
| CAI8006405.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI8006406.1 | ARGININOSUCCINATE LYASE |
| CAI8006407.1 | ARGININOSUCCINATE LYASE |
| CAI8006408.1 | ARGININOSUCCINATE LYASE |
| CAI8006410.1 | 50S RIBOSOMAL PROTEIN L28 |
| CAI8006409.1 | 50S RIBOSOMAL PROTEIN L28 |
| CAI8006411.1 | |
| CAI8006412.1 | |
| CAI8006413.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8006414.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8006415.1 | 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE |
| CAI8006416.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8006417.1 | SHIKIMATE KINASE |
| CAI8006418.1 | GLYCOSYLTRANSFERASE |
| CAI8006419.1 | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE |
| CAI8006420.1 | PROTON/GLUTAMATE-ASPARTATE SYMPORTER |
