About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI7996116.1FURRY-RELATED
CAI7996118.1FRG1 PROTEIN
CAI7996120.1INORGANIC PYROPHOSPHATASE
CAI7996124.1RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR
CAI7996122.1RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR
CAI7996126.1BROAD-RANGE ACID PHOSPHATASE DET1
CAI7996128.1PHOSPHATIDYLINOSITOL KINASE
CAI7996136.1RHO GUANINE EXCHANGE FACTOR-RELATED
CAI7996134.1RHO GUANINE EXCHANGE FACTOR-RELATED
CAI7996130.1RHO GUANINE EXCHANGE FACTOR-RELATED
CAI7996132.1RHO GUANINE EXCHANGE FACTOR-RELATED
CAI7996140.1DEHYDROGENASES, SHORT CHAIN
CAI7996142.1PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER
CAI7996144.1DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED
CAI7996150.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
CAI7996148.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
CAI7996146.1-
CAI7996152.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
CAI7996206.1IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C
CAI7996208.1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J
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