About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8005921.1
CAI8005920.1
CAI8005923.1
CAI8005924.1
CAI8005925.1
CAI8005926.1RFX TRANSCRIPTION FACTOR FAMILY
CAI8005927.1RFX TRANSCRIPTION FACTOR FAMILY
CAI8005928.1TRANSAMIDASE
CAI8005929.1TRANSAMIDASE
CAI8005930.1CARBOXYMETHYLENEBUTENOLIDASE-RELATED
CAI8005931.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8005932.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8005933.1
CAI8005938.1ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE
CAI8005937.1ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE
CAI8005936.1ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE
CAI8005935.1ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE
CAI8005934.1ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE
CAI8005939.1GLUTAMINE-TRNA LIGASE
CAI8005940.1MONOCARBOXYLATE TRANSPORTER
CAI8005941.1QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED
CAI8005942.1RADICAL SAM PROTEINS
CAI8005943.1
CAI8005944.1
CAI8005948.1SHIELDIN COMPLEX SUBUNIT 2
CAI8005946.1SHIELDIN COMPLEX SUBUNIT 2
CAI8005947.1SHIELDIN COMPLEX SUBUNIT 2
CAI8005945.1SHIELDIN COMPLEX SUBUNIT 2
CAI8005949.1SHIELDIN COMPLEX SUBUNIT 2
CAI8005953.1IMPORTIN-7, 8, 11
CAI8005952.1IMPORTIN-7, 8, 11
CAI8005954.1IMPORTIN-7, 8, 11
CAI8005951.1IMPORTIN-7, 8, 11
CAI8005955.1IMPORTIN-7, 8, 11
CAI8005950.1UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER
CAI8005956.1IMPORTIN-7, 8, 11
CAI8005957.1IMPORTIN-7, 8, 11
CAI8005958.1MATRIX PROTEIN, PUTATIVE-RELATED
CAI8005959.1IL16-RELATED
CAI8005960.1MATRIX PROTEIN, PUTATIVE-RELATED
CAI8005961.1
CAI8005962.1PROTEIN CBG07384
CAI8005963.1
CAI8005964.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI8005965.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI8005966.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI8005967.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI8005968.1UNCHARACTERIZED
CAI8005969.1
CAI8005970.1GTPASE, IMAP FAMILY MEMBER-RELATED
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