Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8005871.1 | RUBRERYTHRIN-RELATED |
| CAI8005872.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI8005873.1 | 2-NITROPROPANE DIOXYGENASE |
| CAI8005874.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8005875.1 | RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR |
| CAI8005879.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8005878.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8005877.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8005876.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8005880.1 | RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED |
| CAI8005881.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8005882.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8005884.1 | RIBOSOME MATURATION FACTOR RIMP |
| CAI8005883.1 | RIBOSOME MATURATION FACTOR RIMP |
| CAI8005890.1 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE |
| CAI8005889.1 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE |
| CAI8005888.1 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE |
| CAI8005887.1 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE |
| CAI8005886.1 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE |
| CAI8005885.1 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE |
| CAI8005893.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8005894.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8005892.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8005891.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8005895.1 | PYRUVATE KINASE |
| CAI8005897.1 | CASEIN KINASE-RELATED |
| CAI8005896.1 | CASEIN KINASE-RELATED |
| CAI8005898.1 | |
| CAI8005899.1 | EPH RECEPTOR A5 |
| CAI8005900.1 | EPH RECEPTOR A5 |
| CAI8005901.1 | |
| CAI8005906.1 | NARDILYSIN |
| CAI8005905.1 | NARDILYSIN |
| CAI8005904.1 | NARDILYSIN |
| CAI8005903.1 | NARDILYSIN |
| CAI8005902.1 | NARDILYSIN |
| CAI8005908.1 | |
| CAI8005907.1 | |
| CAI8005909.1 | PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG |
| CAI8005910.1 | PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG |
| CAI8005911.1 | |
| CAI8005912.1 | CERAMIDE GLUCOSYLTRANSFERASE |
| CAI8005913.1 | CERAMIDE GLUCOSYLTRANSFERASE |
| CAI8005914.1 | DIOXYGENASE RV0097-RELATED |
| CAI8005915.1 | DIOXYGENASE RV0097-RELATED |
| CAI8005916.1 | DIOXYGENASE RV0097-RELATED |
| CAI8005917.1 | TESTIS-EXPRESSED PROTEIN 43 |
| CAI8005918.1 | |
| CAI8005919.1 | ANNEXIN |
| CAI8005922.1 |
