Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8005971.1 | |
| CAI8005972.1 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| CAI8005973.1 | |
| CAI8005974.1 | |
| CAI8005975.1 | |
| CAI8005976.1 | UNCHARACTERIZED |
| CAI8005979.1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
| CAI8005978.1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
| CAI8005977.1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
| CAI8005981.1 | INTEGRAL MEMBRANE PROTEIN GPR177 |
| CAI8005980.1 | INTEGRAL MEMBRANE PROTEIN GPR177 |
| CAI8005983.1 | INTEGRAL MEMBRANE PROTEIN GPR177 |
| CAI8005982.1 | INTEGRAL MEMBRANE PROTEIN GPR177 |
| CAI8005984.1 | INTEGRAL MEMBRANE PROTEIN GPR177 |
| CAI8005985.1 | INTEGRAL MEMBRANE PROTEIN GPR177 |
| CAI8005986.1 | |
| CAI8005987.1 | RGS-GAIP INTERACTING PROTEIN GIPC |
| CAI8005988.1 | RGS-GAIP INTERACTING PROTEIN GIPC |
| CAI8005989.1 | |
| CAI8005990.1 | DNA EXCISION REPAIR PROTEIN ERCC-8 |
| CAI8005991.1 | DNA EXCISION REPAIR PROTEIN ERCC-8 |
| CAI8005992.1 | DNA EXCISION REPAIR PROTEIN ERCC-8 |
| CAI8005994.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 6 SPATA6 |
| CAI8005995.1 | |
| CAI8005993.1 | |
| CAI8005997.1 | PROTEIN CBG16200 |
| CAI8005996.1 | PROTEIN CBG16200 |
| CAI8005999.1 | PROTEIN CBG16200 |
| CAI8005998.1 | PROTEIN CBG16200 |
| CAI8006001.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8006000.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8006002.1 | |
| CAI8006003.1 | |
| CAI8006004.1 | |
| CAI8006006.1 | |
| CAI8006005.1 | |
| CAI8006007.1 | |
| CAI8006009.1 | SR-RELATED CTD ASSOCIATED FACTOR 6 |
| CAI8006010.1 | SR-RELATED CTD ASSOCIATED FACTOR 6 |
| CAI8006011.1 | SR-RELATED CTD ASSOCIATED FACTOR 6 |
| CAI8006008.1 | SR-RELATED CTD ASSOCIATED FACTOR 6 |
| CAI8006012.1 | SR-RELATED CTD ASSOCIATED FACTOR 6 |
| CAI8006014.1 | TIPA |
| CAI8006013.1 | GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL |
| CAI8006015.1 | ARCHAEMETZINCIN |
| CAI8006019.1 | |
| CAI8006018.1 | |
| CAI8006017.1 | |
| CAI8006016.1 | |
| CAI8006020.1 |
