Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006021.1 | |
| CAI8006022.1 | |
| CAI8006024.1 | |
| CAI8006023.1 | |
| CAI8006026.1 | |
| CAI8006028.1 | |
| CAI8006027.1 | |
| CAI8006025.1 | |
| CAI8006029.1 | |
| CAI8006030.1 | |
| CAI8006031.1 | |
| CAI8006032.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8006034.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8006033.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8006035.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8006037.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| CAI8006036.1 | IMMUNOGLOBULIN FC RECEPTOR |
| CAI8006038.1 | |
| CAI8006041.1 | |
| CAI8006040.1 | |
| CAI8006039.1 | |
| CAI8006042.1 | |
| CAI8006043.1 | |
| CAI8006044.1 | |
| CAI8006045.1 | |
| CAI8006048.1 | CALCIUM BINDING PROTEINS |
| CAI8006046.1 | |
| CAI8006047.1 | |
| CAI8006050.1 | COLLAGEN ALPHA |
| CAI8006049.1 | |
| CAI8006052.1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
| CAI8006051.1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
| CAI8006053.1 | LEUCINE ZIPPER CONTAINING TRANSCRIPTION FACTOR LZF1 |
| CAI8006054.1 | LEUCINE ZIPPER CONTAINING TRANSCRIPTION FACTOR LZF1 |
| CAI8006055.1 | |
| CAI8006056.1 | LEUCINE ZIPPER CONTAINING TRANSCRIPTION FACTOR LZF1 |
| CAI8006057.1 | SCAVENGER RECEPTOR CLASS F |
| CAI8006058.1 | SHUGOSHIN |
| CAI8006059.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8006061.1 | |
| CAI8006060.1 | |
| CAI8006062.1 | |
| CAI8006066.1 | UNCHARACTERIZED |
| CAI8006065.1 | UNCHARACTERIZED |
| CAI8006064.1 | UNCHARACTERIZED |
| CAI8006063.1 | |
| CAI8006067.1 | UNCHARACTERIZED |
| CAI8006068.1 | |
| CAI8006076.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8006077.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
