Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006172.1 | GABA-B RECEPTOR |
| CAI8006171.1 | |
| CAI8006175.1 | N-ALPHA-ACETYLTRANSFERASE |
| CAI8006174.1 | N-ALPHA-ACETYLTRANSFERASE |
| CAI8006173.1 | N-ALPHA-ACETYLTRANSFERASE |
| CAI8006176.1 | |
| CAI8006177.1 | G-PROTEIN COUPLED RECEPTOR 89-RELATED |
| CAI8006178.1 | UPF0696 PROTEIN C11ORF68 |
| CAI8006179.1 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 |
| CAI8006180.1 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 |
| CAI8006181.1 | |
| CAI8006183.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8006185.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8006184.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8006182.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8006186.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8006187.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8006188.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8006189.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8006191.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8006190.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8006192.1 | |
| CAI8006193.1 | BLL7424 PROTEIN |
| CAI8006195.1 | PUP DEAMIDASE/DEPUPYLASE |
| CAI8006194.1 | PUP DEAMIDASE/DEPUPYLASE |
| CAI8006196.1 | PUP DEAMIDASE/DEPUPYLASE |
| CAI8006197.1 | AAA-FAMILY ATPASE |
| CAI8006198.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8006200.1 | |
| CAI8006199.1 | |
| CAI8006201.1 | |
| CAI8006202.1 | |
| CAI8006203.1 | |
| CAI8006204.1 | |
| CAI8006205.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8006207.1 | |
| CAI8006206.1 | |
| CAI8006208.1 | |
| CAI8006209.1 | |
| CAI8006213.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8006211.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8006212.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8006210.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8006214.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8006215.1 | |
| CAI8006219.1 | |
| CAI8006218.1 | |
| CAI8006217.1 | |
| CAI8006216.1 | |
| CAI8006220.1 |
