Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006269.1 | |
| CAI8006268.1 | |
| CAI8006273.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8006274.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8006275.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8006276.1 | |
| CAI8006277.1 | |
| CAI8006278.1 | |
| CAI8006280.1 | |
| CAI8006279.1 | |
| CAI8006281.1 | |
| CAI8006282.1 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 |
| CAI8006283.1 | |
| CAI8006289.1 | ACTIN |
| CAI8006287.1 | ACTIN |
| CAI8006288.1 | ACTIN |
| CAI8006286.1 | ACTIN |
| CAI8006285.1 | ACTIN |
| CAI8006284.1 | |
| CAI8006290.1 | ACTIN |
| CAI8006291.1 | ACTIN |
| CAI8006292.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8006293.1 | PRESENILIN |
| CAI8006294.1 | |
| CAI8006295.1 | |
| CAI8006296.1 | |
| CAI8006297.1 | OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN |
| CAI8006299.1 | UNCHARACTERIZED |
| CAI8006298.1 | UNCHARACTERIZED |
| CAI8006300.1 | UNCHARACTERIZED |
| CAI8006301.1 | UNCHARACTERIZED |
| CAI8006302.1 | UNCHARACTERIZED |
| CAI8006303.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8006304.1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER |
| CAI8006305.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8006306.1 | TRANSMEMBRANE PROTEIN 106B |
| CAI8006308.1 | 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED |
| CAI8006307.1 | 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED |
| CAI8006309.1 | 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED |
| CAI8006312.1 | WD-REPEAT PROTEIN |
| CAI8006313.1 | WD-REPEAT PROTEIN |
| CAI8006311.1 | WD-REPEAT PROTEIN |
| CAI8006310.1 | |
| CAI8006314.1 | WD-REPEAT PROTEIN |
| CAI8006315.1 | |
| CAI8006317.1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| CAI8006316.1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| CAI8006318.1 | |
| CAI8006324.1 | DPY-19-LIKE 1, LIKE (H. SAPIENS) |
| CAI8006320.1 | DPY-19-LIKE 1, LIKE (H. SAPIENS) |
