Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006421.1 | PHOSPHOFRUCTOKINASE |
| CAI8006422.1 | |
| CAI8006423.1 | PROLIPOPROTEIN DIACYLGLYCERYL TRANSFERASE |
| CAI8006424.1 | |
| CAI8006425.1 | TAIL-SPECIFIC PROTEASE |
| CAI8006426.1 | TAIL-SPECIFIC PROTEASE |
| CAI8006427.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E |
| CAI8006428.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8006429.1 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED |
| CAI8006430.1 | |
| CAI8006431.1 | MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC |
| CAI8006432.1 | |
| CAI8006445.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006444.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006442.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006441.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006443.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006440.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006439.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006437.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006438.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006436.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006435.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006434.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006433.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8006446.1 | |
| CAI8006447.1 | |
| CAI8006448.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8006449.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8006450.1 | TRANSPOSASE |
| CAI8006451.1 | DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE, PUTATIVE-RELATED |
| CAI8006452.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI8006453.1 | 5-OXOPROLINASE RELATED |
| CAI8006454.1 | 5-OXOPROLINASE RELATED |
| CAI8006455.1 | |
| CAI8006457.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8006456.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8006458.1 | T-BOX PROTEIN-RELATED |
| CAI8006463.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8006461.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8006460.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8006462.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8006459.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8006464.1 | |
| CAI8006465.1 | LON PROTEASE |
| CAI8006466.1 | LON PROTEASE |
| CAI8006467.1 | HOMEOBOX PROTEIN EMX-RELATED |
| CAI8006469.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8006471.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8006470.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
