Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006521.1 | DETHIOBIOTIN SYNTHETASE |
| CAI8006522.1 | |
| CAI8006523.1 | D-MALATE DEHYDROGENASE [DECARBOXYLATING] |
| CAI8006524.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8006525.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8006526.1 | |
| CAI8006527.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8006528.1 | |
| CAI8006529.1 | SUBTILISIN-RELATED |
| CAI8006530.1 | |
| CAI8006532.1 | |
| CAI8006531.1 | |
| CAI8006533.1 | HYDROLASE-RELATED |
| CAI8006534.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI8006535.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI8006536.1 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| CAI8006537.1 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| CAI8006539.1 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| CAI8006538.1 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| CAI8006540.1 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| CAI8006541.1 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| CAI8006542.1 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| CAI8006543.1 | |
| CAI8006544.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8006545.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8006546.1 | RNA POLYMERASE II HOLOENZYME COMPONENT SRB7 |
| CAI8006547.1 | |
| CAI8006548.1 | |
| CAI8006549.1 | 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER |
| CAI8006550.1 | RAN BINDING PROTEIN 9-RELATED |
| CAI8006551.1 | |
| CAI8006552.1 | NUCLEAR SPECKLE SPLICING REGULATORY PROTEIN 1 |
| CAI8006553.1 | FAD-DEPENDENT OXIDOREDUCTASE |
| CAI8006554.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8006556.1 | CYTOKINE RECEPTOR |
| CAI8006555.1 | CYTOKINE RECEPTOR |
| CAI8006557.1 | |
| CAI8006558.1 | PROTEIN SIDEKICK |
| CAI8006559.1 | |
| CAI8006560.1 | |
| CAI8006561.1 | |
| CAI8006562.1 | PROPHAGE INTEGRASE |
| CAI8006563.1 | PROPHAGE INTEGRASE |
| CAI8006564.1 | |
| CAI8006565.1 | |
| CAI8006567.1 | |
| CAI8006566.1 | |
| CAI8006568.1 | |
| CAI8006569.1 | |
| CAI8006570.1 |
