Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006621.1 | DNA LIGASE 1/3 FAMILY MEMBER |
| CAI8006622.1 | EPOXIDE HYDROLASE 1-RELATED |
| CAI8006623.1 | ROK (REPRESSOR, ORF, KINASE) FAMILY |
| CAI8006624.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8006625.1 | ROK (REPRESSOR, ORF, KINASE) FAMILY |
| CAI8006626.1 | |
| CAI8006627.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8006628.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8006629.1 | |
| CAI8006630.1 | HYDROPEROXIDE REDUCTASE |
| CAI8006631.1 | |
| CAI8006632.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8006633.1 | NF-E2 INDUCIBLE PROTEIN |
| CAI8006634.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8006635.1 | |
| CAI8006636.1 | |
| CAI8006640.1 | O-GLCNACASE |
| CAI8006639.1 | O-GLCNACASE |
| CAI8006638.1 | O-GLCNACASE |
| CAI8006641.1 | O-GLCNACASE |
| CAI8006637.1 | |
| CAI8006645.1 | CELLULAR TUMOR ANTIGEN P53 |
| CAI8006646.1 | CELLULAR TUMOR ANTIGEN P53 |
| CAI8006644.1 | CELLULAR TUMOR ANTIGEN P53 |
| CAI8006643.1 | CELLULAR TUMOR ANTIGEN P53 |
| CAI8006642.1 | CELLULAR TUMOR ANTIGEN P53 |
| CAI8006647.1 | CELLULAR TUMOR ANTIGEN P53 |
| CAI8006648.1 | CELLULAR TUMOR ANTIGEN P53 |
| CAI8006649.1 | |
| CAI8006655.1 | UNCHARACTERIZED |
| CAI8006654.1 | UNCHARACTERIZED |
| CAI8006653.1 | UNCHARACTERIZED |
| CAI8006652.1 | UNCHARACTERIZED |
| CAI8006651.1 | UNCHARACTERIZED |
| CAI8006650.1 | UNCHARACTERIZED |
| CAI8006656.1 | UNCHARACTERIZED |
| CAI8006657.1 | UNCHARACTERIZED |
| CAI8006658.1 | UNCHARACTERIZED |
| CAI8006661.1 | MUCIN 4-RELATED |
| CAI8006660.1 | MUCIN 4-RELATED |
| CAI8006659.1 | |
| CAI8006664.1 | ANION EXCHANGE PROTEIN |
| CAI8006665.1 | ANION EXCHANGE PROTEIN |
| CAI8006666.1 | ANION EXCHANGE PROTEIN |
| CAI8006663.1 | ANION EXCHANGE PROTEIN |
| CAI8006662.1 | |
| CAI8006667.1 | ANION EXCHANGE PROTEIN |
| CAI8006668.1 | ANION EXCHANGE PROTEIN |
| CAI8006669.1 | ANION EXCHANGE PROTEIN |
| CAI8006670.1 |
