Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006721.1 | OS01G0106600 PROTEIN |
| CAI8006722.1 | |
| CAI8006723.1 | PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE-RELATED |
| CAI8006724.1 | - |
| CAI8006725.1 | ALDEHYDE DEHYDROGENASE |
| CAI8006726.1 | UVRC/OXIDOREDUCTASE |
| CAI8006727.1 | UVRC/OXIDOREDUCTASE |
| CAI8006728.1 | PHAGE INTEGRASE-RELATED |
| CAI8006729.1 | 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED |
| CAI8006730.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8006731.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8006732.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8006733.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8006734.1 | COLLAGEN ALPHA |
| CAI8006735.1 | |
| CAI8006736.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8006737.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8006738.1 | |
| CAI8006739.1 | CADHERIN-87A |
| CAI8006741.1 | SORTING NEXIN 17 AND 27 |
| CAI8006742.1 | SORTING NEXIN 17 AND 27 |
| CAI8006740.1 | SORTING NEXIN 17 AND 27 |
| CAI8006743.1 | |
| CAI8006746.1 | E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED |
| CAI8006744.1 | E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED |
| CAI8006745.1 | E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED |
| CAI8006747.1 | PROLIFERATING CELL NUCLEAR ANTIGEN |
| CAI8006750.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8006748.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8006749.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8006751.1 | |
| CAI8006752.1 | |
| CAI8006753.1 | |
| CAI8006754.1 | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
| CAI8006756.1 | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
| CAI8006755.1 | GLUTAREDOXIN |
| CAI8006759.1 | PROTEASE FAMILY M28 PLASMA GLUTAMATE CARBOXYPEPTIDASE-RELATED |
| CAI8006758.1 | PROTEASE FAMILY M28 PLASMA GLUTAMATE CARBOXYPEPTIDASE-RELATED |
| CAI8006757.1 | PROTEASE FAMILY M28 PLASMA GLUTAMATE CARBOXYPEPTIDASE-RELATED |
| CAI8006760.1 | DUF814-RELATED |
| CAI8006761.1 | |
| CAI8006762.1 | |
| CAI8006763.1 | |
| CAI8006764.1 | |
| CAI8006766.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8006765.1 | |
| CAI8006767.1 | METHIONINE AMINOPEPTIDASE 2 |
| CAI8006769.1 | METHIONINE AMINOPEPTIDASE 2 |
| CAI8006768.1 | METHIONINE AMINOPEPTIDASE 2 |
| CAI8006770.1 | METHIONINE AMINOPEPTIDASE 2 |
