Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006472.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8006468.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8006473.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8006474.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8006477.1 | RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN |
| CAI8006475.1 | RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN |
| CAI8006476.1 | RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN |
| CAI8006481.1 | SIMILAR TO KIAA0825 PROTEIN |
| CAI8006480.1 | SIMILAR TO KIAA0825 PROTEIN |
| CAI8006479.1 | SIMILAR TO KIAA0825 PROTEIN |
| CAI8006478.1 | SIMILAR TO KIAA0825 PROTEIN |
| CAI8006482.1 | SIMILAR TO KIAA0825 PROTEIN |
| CAI8006483.1 | |
| CAI8006484.1 | |
| CAI8006485.1 | SIMILAR TO KIAA0825 PROTEIN |
| CAI8006486.1 | SIMILAR TO KIAA0825 PROTEIN |
| CAI8006487.1 | |
| CAI8006488.1 | |
| CAI8006490.1 | |
| CAI8006489.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT |
| CAI8006492.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT |
| CAI8006491.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT |
| CAI8006493.1 | TUMOR NECROSIS FACTOR INDUCED PROTEIN |
| CAI8006494.1 | INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN |
| CAI8006498.1 | THREONINE-TRNA LIGASE |
| CAI8006497.1 | THREONINE-TRNA LIGASE |
| CAI8006496.1 | THREONINE-TRNA LIGASE |
| CAI8006495.1 | THREONINE-TRNA LIGASE |
| CAI8006499.1 | THREONINE-TRNA LIGASE |
| CAI8006500.1 | THREONINE-TRNA LIGASE |
| CAI8006501.1 | THREONINE-TRNA LIGASE |
| CAI8006502.1 | COMM DOMAIN CONTAINING PROTEIN 10 |
| CAI8006503.1 | |
| CAI8006504.1 | UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER |
| CAI8006505.1 | VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 |
| CAI8006507.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8006506.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8006508.1 | |
| CAI8006509.1 | THIAZOLE SYNTHASE |
| CAI8006510.1 | SULFUR CARRIER PROTEIN THIS |
| CAI8006511.1 | CYTOCHROME C ASSEMBLY PROTEIN-RELATED |
| CAI8006512.1 | THIOL:DISULFIDE INTERCHANGE PROTEIN DSBE |
| CAI8006513.1 | |
| CAI8006514.1 | COBYRINATE A,C-DIAMIDE SYNTHASE |
| CAI8006515.1 | COBYRINATE A,C-DIAMIDE SYNTHASE |
| CAI8006516.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8006517.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8006518.1 | COBALAMIN BIOSYNTHESIS PROTEIN CBIB |
| CAI8006519.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8006520.1 | BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED |
