Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8006119.1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| CAI8006122.1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| CAI8006123.1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| CAI8006124.1 | MEIOSIS-EXPRESSED GENE 1 PROTEIN |
| CAI8006131.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| CAI8006130.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| CAI8006132.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| CAI8006128.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| CAI8006129.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| CAI8006127.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| CAI8006126.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| CAI8006125.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| CAI8006133.1 | BETA-TUBULIN COFACTOR D |
| CAI8006135.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8006134.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8006136.1 | |
| CAI8006140.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8006139.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8006141.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8006142.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8006138.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8006137.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8006144.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8006143.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8006145.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8006146.1 | |
| CAI8006147.1 | MYOSIN |
| CAI8006148.1 | |
| CAI8006149.1 | |
| CAI8006150.1 | |
| CAI8006151.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8006152.1 | DNA REPAIR PROTEIN RADA |
| CAI8006153.1 | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
| CAI8006154.1 | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED |
| CAI8006155.1 | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED |
| CAI8006156.1 | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED |
| CAI8006157.1 | PROTOPORPHYRINOGEN OXIDASE |
| CAI8006158.1 | TRICARBOXYLATE-BINDING PROTEIN |
| CAI8006159.1 | |
| CAI8006165.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8006164.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8006163.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8006162.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8006161.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8006166.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8006167.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8006168.1 | |
| CAI8006160.1 | |
| CAI8006169.1 | |
| CAI8006170.1 | WSCD FAMILY MEMBER CG9164 |
