Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8005821.1 | SLR1885 PROTEIN |
| CAI8005822.1 | |
| CAI8005824.1 | HISTIDINE TRIAD HIT PROTEIN |
| CAI8005823.1 | HISTIDINE TRIAD HIT PROTEIN |
| CAI8005825.1 | ACYL-COA DEHYDROGENASE |
| CAI8005826.1 | GLYCINE N-METHYLTRANSFERASE |
| CAI8005827.1 | |
| CAI8005828.1 | ZGC:194242 |
| CAI8005829.1 | |
| CAI8005830.1 | |
| CAI8005831.1 | - |
| CAI8005832.1 | UNCHARACTERIZED |
| CAI8005833.1 | |
| CAI8005835.1 | SUPPRESSOR OF TY 5 |
| CAI8005834.1 | SUPPRESSOR OF TY 5 |
| CAI8005837.1 | |
| CAI8005836.1 | |
| CAI8005838.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8005839.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8005840.1 | |
| CAI8005841.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8005842.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8005843.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8005844.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8005845.1 | OCTANOYLTRANSFERASE |
| CAI8005846.1 | ASPARTATE AMINOTRANSFERASE YHDR-RELATED |
| CAI8005847.1 | H2HPP ISOMERASE |
| CAI8005848.1 | - |
| CAI8005849.1 | |
| CAI8005850.1 | |
| CAI8005852.1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
| CAI8005851.1 | LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8005853.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI8005854.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8005855.1 | |
| CAI8005856.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8005857.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8005858.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8005859.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8005860.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8005861.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8005862.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8005863.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8005864.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8005865.1 | SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN |
| CAI8005866.1 | |
| CAI8005867.1 | 2,4-DIENOYL-COA REDUCTASE |
| CAI8005868.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8005869.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8005870.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
