Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007171.1 | TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE |
| CAI8007172.1 | ALLANTOINASE |
| CAI8007173.1 | METHIONINE SULFOXIDE REDUCTASE |
| CAI8007174.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI8007175.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI8007176.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI8007177.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8007178.1 | |
| CAI8007179.1 | SULFATASE |
| CAI8007180.1 | EXOSOME COMPLEX COMPONENT |
| CAI8007182.1 | EXOSOME COMPLEX COMPONENT |
| CAI8007181.1 | EXOSOME COMPLEX COMPONENT |
| CAI8007184.1 | HISTIDINE TRIAD HIT PROTEIN |
| CAI8007183.1 | HISTIDINE TRIAD HIT PROTEIN |
| CAI8007185.1 | |
| CAI8007186.1 | |
| CAI8007187.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8007188.1 | |
| CAI8007189.1 | |
| CAI8007190.1 | |
| CAI8007192.1 | |
| CAI8007191.1 | |
| CAI8007193.1 | |
| CAI8007194.1 | |
| CAI8007195.1 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
| CAI8007196.1 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
| CAI8007197.1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| CAI8007198.1 | |
| CAI8007199.1 | |
| CAI8007200.1 | EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER |
| CAI8007204.1 | F-BOX ONLY PROTEIN |
| CAI8007203.1 | F-BOX ONLY PROTEIN |
| CAI8007202.1 | F-BOX ONLY PROTEIN |
| CAI8007201.1 | F-BOX ONLY PROTEIN |
| CAI8007205.1 | F-BOX ONLY PROTEIN |
| CAI8007206.1 | |
| CAI8007207.1 | SIMILAR TO HYPOTHETICAL PROTEIN FLJ40298 |
| CAI8007208.1 | SIMILAR TO HYPOTHETICAL PROTEIN FLJ40298 |
| CAI8007209.1 | OS-9-RELATED |
| CAI8007211.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| CAI8007210.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| CAI8007212.1 | |
| CAI8007214.1 | |
| CAI8007213.1 | |
| CAI8007215.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8007216.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8007219.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8007220.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8007221.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8007223.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
